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hci-unihd / antibodies-analysis-issues

Issue tracker for problems in the antibodies analysis workflow.
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Mistake in segmentation leads to cells being incorrectly classified as infected - plateU1rep1_20200519_102648_382 - F10-0004 #86

Open imagirom opened 4 years ago

imagirom commented 4 years ago

{"plateName":"plateU1rep1_20200519_102648_382","siteName":"F10-0004","pixelLocation":[29227.712252964426,16650.3209486166,0.0],"analysisVersion":"?"}

Screenshot

tischi commented 4 years ago

You mean here, right?

image

I guess the idea of machine learning which nuclei are infected and which not would help here. @constantinpape

imagirom commented 4 years ago

Yes and yes.

constantinpape commented 4 years ago

I guess the idea of machine learning which nuclei are infected and which not would help here. @constantinpape

Yes, working on it and should have initial results on Monday. (But would of course rather keep it out of the preprint if possible in order to test it properly and to not complicate the story of the manuscript.)