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hddm-devs / hddm

HDDM is a python module that implements Hierarchical Bayesian parameter estimation of Drift Diffusion Models (via PyMC).
http://ski.clps.brown.edu/hddm_docs/
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*EXTREMELY* slow execution of code #72

Open sarahvassall opened 3 years ago

sarahvassall commented 3 years ago

Hi,

I've been using the HDDM package in Jupyter Notebook for several weeks without any problems, then very suddenly (possibly correlated with a forced overnight Windows update?) the hddm.HDDM function began running SO slowly--I'm talking 2-3 seconds PER SAMPLE.

This may not be an issue with the HDDM package, but rather a Python issue--I've had the same issue in Jupyter Lab and Spyder so I don't know. But the other elements of the code (like creating a data frame) work fine and can be executed quite quickly.

Is anyone else having this issue?

Thanks, Sarah

sarahvassall commented 3 years ago

I forgot to mention, I'm using py36 and the HDDM version I have is 0.8.0