hdmf-dev / hdmf-zarr

Zarr I/O backend for HDMF
https://hdmf-zarr.readthedocs.io/
Other
7 stars 7 forks source link

[Bug]: Test for parallel write failing with HDMF dev #127

Closed oruebel closed 11 months ago

oruebel commented 11 months ago

What happened?

The test suite is currently failing when running against the development version of HDMF on the dev branch.

https://github.com/hdmf-dev/hdmf/pull/953 added checks for initialization of ids in DynamicTable, which causes and error for the parallel tests because ids don't appear to be specified.

Steps to Reproduce

pytest

Traceback

======================================================================================== short test summary info =========================================================================================
FAILED tests/unit/test_parallel_write.py::test_simple_tqdm - ValueError: Cannot determine row id's for table. Must provide ids with same length as the columns when all columns are specified via DataChunkIterator objects.
FAILED tests/unit/test_parallel_write.py::test_compound_tqdm - ValueError: Cannot determine row id's for table. Must provide ids with same length as the columns when all columns are specified via DataChunkIterator objects.
============================================================================= 2 failed, 451 passed, 4002 warnings in 16.15s ==============================================================================

Operating System

Windows

Python Executable

Conda

Python Version

3.8

Package Versions

...

Code of Conduct