rly
commented
2 weeks ago This failure is due to numpy 2.0. https://numpy.org/devdocs/numpy_2_0_migration_guide.html
HDMF does not yet support numpy 2.0 (https://github.com/hdmf-dev/hdmf/issues/1106). It appears that the nwbinspector test installs h5py with ROS3 from conda-forge, which installs numpy 2.0 from conda-forge. When the latest HDMF is installed by pip, it installs numpy<2.0, but because numpy 2.0 was installed by conda and numpy<2.0 was installed by pip, it looks like the 2.0 version from conda takes priority and results in this error.
We will address this in HDMF but probably not this week given our travel. If possible, it may be better to address this in the inspector workflow.
What happened?
Caught by NWB Inspector daily tests: https://github.com/NeurodataWithoutBorders/nwbinspector/actions/runs/9549108007/job/26317937248#step:12:57
Steps to Reproduce
Traceback
Operating System
macOS
Python Executable
Conda
Python Version
3.12
Package Versions
https://github.com/NeurodataWithoutBorders/nwbinspector/actions/runs/9549108007/job/26317937248#step:6:339