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hdmf-dev / hdmf

The Hierarchical Data Modeling Framework
http://hdmf.readthedocs.io
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duecredit results in internal error #616

Closed rly closed 10 months ago

rly commented 3 years ago

Description

This used to work...

test1.py:

import hdmf
python -m duecredit test1.py

output:

DueCredit Report:
- HDMF: Hierarchical Data Modeling Framework for Modern Science Data Standards / hdmf/ (v 2.5.5) [1]
- Scientific tools library / numpy (v 1.18.5) [2]

2 packages cited
0 modules cited
0 functions cited

References
----------

[1] 2021-05-19 14:56:29,308 [WARNING] DueCredit internal failure while running <function DueSwitch.dump at 0x0000028D23DA1160>: UnicodeDecodeError('charmap', b'{\n    "primary-dialects": {\n        "af": "af-ZA",\n        "ar": "ar",\n        "bg": "bg-BG",\n        "ca": "ca-AD",\n        "cs": "cs-CZ",\n        "cy": "cy-GB",\n        "da": "da-DK",\n        "de": "de-DE",\n        "el": "el-GR",\n        "en": "en-US",\n        "es": "es-ES",\n        "et": "et-EE",\n        "eu": "eu",\n        "fa": "fa-IR",\n        "fi": "fi-FI",\n        "fr": "fr-FR",\n        "he": "he-IL",\n        "hr": "hr-HR",\n        "hu": "hu-HU",\n        "id": "id-ID",\n        "is": "is-IS",\n        "it": "it-IT",\n        "ja": "ja-JP",\n
    "km": "km-KH",\n        "ko": "ko-KR",\n        "lt": "lt-LT",\n        "lv": "lv-LV",\n        "mn": "mn-MN",\n        "nb": "nb-NO",\n        "nl": "nl-NL",\n        "nn": "nn-NO",\n        "pl": "pl-PL",\n        "pt": "pt-PT",\n        "ro": "ro-RO",\n        "ru": "ru-RU",\n        "sk": "sk-SK",\n        "sl": "sl-SI",\n        "sr": "sr-RS",\n        "sv": "sv-SE",\n        "th": "th-TH",\n        "tr": "tr-TR",\n        "uk": "uk-UA",\n        "vi": "vi-VN",\n        "zh": "zh-CN"\n    },\n    "language-names": {\n        "af-ZA": [\n
         "Afrikaans",\n            "Afrikaans"\n        ],\n        "ar": [\n            "\xd8\xa7\xd9\x84\xd8\xb9\xd8\xb1\xd8\xa8\xd9\x8a\xd8\xa9",\n            "Arabic"\n        ],\n
       "bg-BG": [\n            "\xd0\x91\xd1\x8a\xd0\xbb\xd0\xb3\xd0\xb0\xd1\x80\xd1\x81\xd0\xba\xd0\xb8",\n            "Bulgarian"\n        ],\n        "ca-AD": [\n            "Catal\xc3\xa0",\n            "Catalan"\n        ],\n        "cs-CZ": [\n            "\xc4\x8ce\xc5\xa1tina",\n            "Czech"\n        ],\n        "cy-GB": [\n            "Cymraeg",\n
       "Welsh"\n        ],\n        "da-DK": [\n            "Dansk",\n            "Danish"\n        ],\n        "de-AT": [\n            "Deutsch (\xc3\x96sterreich)",\n            "German (Austria)"\n        ],\n        "de-CH": [\n            "Deutsch (Schweiz)",\n            "German (Switzerland)"\n        ],\n        "de-DE": [\n            "Deutsch (Deutschland)",\n            "German (Germany)"\n        ],\n        "el-GR": [\n            "\xce\x95\xce\xbb\xce\xbb\xce\xb7\xce\xbd\xce\xb9\xce\xba\xce\xac",\n            "Greek"\n        ],\n
   "en-GB": [\n            "English (UK)",\n            "English (UK)"\n        ],\n        "en-US": [\n            "English (US)",\n            "English (US)"\n        ],\n        "es-CL": [\n            "Espa\xc3\xb1ol (Chile)",\n            "Spanish (Chile)"\n        ],\n        "es-ES": [\n            "Espa\xc3\xb1ol (Espa\xc3\xb1a)",\n            "Spanish (Spain)"\n        ],\n        "es-MX": [\n            "Espa\xc3\xb1ol (M\xc3\xa9xico)",\n            "Spanish (Mexico)"\n        ],\n        "et-EE": [\n            "Eesti",\n            "Estonian"\n        ],\n        "eu": [\n            "Euskara",\n            "Basque"\n        ],\n        "fa-IR": [\n            "\xd9\x81\xd8\xa7\xd8\xb1\xd8\xb3\xdb\x8c",\n            "Persian"\n        ],\n        "fi-FI": [\n            "Suomi",\n            "Finnish"\n        ],\n        "fr-CA": [\n            "Fran\xc3\xa7ais (Canada)",\n            "French (Canada)"\n        ],\n        "fr-FR": [\n            "Fran\xc3\xa7ais (France)",\n            "French (France)"\n        ],\n        "he-IL": [\n            "\xd7\xa2\xd7\x91\xd7\xa8\xd7\x99\xd7\xaa",\n            "Hebrew"\n        ],\n        "hr-HR": [\n            "Hrvatski",\n            "Croatian"\n        ],\n        "hu-HU": [\n            "Magyar",\n            "Hungarian"\n        ],\n        "id-ID": [\n            "Bahasa Indonesia",\n            "Indonesian"    \n        ],\n        "is-IS": [\n            "\xc3\x8dslenska",\n            "Icelandic"\n        ],\n        "it-IT": [\n            "Italiano",\n            "Italian"\n        ],\n        "ja-JP": [\n            "\xe6\x97\xa5\xe6\x9c\xac\xe8\xaa\x9e",\n
  "Japanese"\n        ],\n        "km-KH": [\n            "\xe1\x9e\x97\xe1\x9e\xb6\xe1\x9e\x9f\xe1\x9e\xb6\xe1\x9e\x81\xe1\x9f\x92\xe1\x9e\x98\xe1\x9f\x82\xe1\x9e\x9a",\n            "Khmer"\n        ],\n        "ko-KR": [\n            "\xed\x95\x9c\xea\xb5\xad\xec\x96\xb4",\n            "Korean"\n        ],\n        "lt-LT": [\n            "Lietuvi\xc5\xb3",\n
     "Lithuanian"\n        ],\n        "lv-LV": [\n            "Latvie\xc5\xa1u",\n            "Latvian"\n        ],\n        "mn-MN": [\n            "\xd0\x9c\xd0\xbe\xd0\xbd\xd0\xb3\xd0\xbe\xd0\xbb",\n            "Mongolian"\n        ],\n        "nb-NO": [\n            "Norsk bokm\xc3\xa5l",\n            "Norwegian (Bokm\xc3\xa5l)"\n        ],\n        "nl-NL": [\n
           "Nederlands",\n            "Dutch"\n        ],\n        "nn-NO": [\n            "Norsk nynorsk",\n            "Norwegian (Nynorsk)"\n        ],\n        "pl-PL": [\n
   "Polski",\n            "Polish"\n        ],\n        "pt-BR": [\n            "Portugu\xc3\xaas (Brasil)",\n            "Portuguese (Brazil)"\n        ],\n        "pt-PT": [\n
    "Portugu\xc3\xaas (Portugal)",\n            "Portuguese (Portugal)"\n        ],\n        "ro-RO": [\n            "Rom\xc3\xa2n\xc4\x83",\n            "Romanian"\n        ],\n
 "ru-RU": [\n            "\xd0\xa0\xd1\x83\xd1\x81\xd1\x81\xd0\xba\xd0\xb8\xd0\xb9",\n            "Russian"\n        ],\n        "sk-SK": [\n            "Sloven\xc4\x8dina",\n
  "Slovak"\n        ],\n        "sl-SI": [\n            "Sloven\xc5\xa1\xc4\x8dina",\n            "Slovenian"\n        ],\n        "sr-RS": [\n            "\xd0\xa1\xd1\x80\xd0\xbf\xd1\x81\xd0\xba\xd0\xb8 / Srpski",\n            "Serbian"\n        ],\n        "sv-SE": [\n            "Svenska",\n            "Swedish"\n        ],\n        "th-TH": [\n            "\xe0\xb9\x84\xe0\xb8\x97\xe0\xb8\xa2",\n            "Thai"\n        ],\n        "tr-TR": [\n            "T\xc3\xbcrk\xc3\xa7e",\n            "Turkish"\n        ],\n        "uk-UA": [\n
     "\xd0\xa3\xd0\xba\xd1\x80\xd0\xb0\xd1\x97\xd0\xbd\xd1\x81\xd1\x8c\xd0\xba\xd0\xb0",\n            "Ukrainian"\n        ],\n        "vi-VN": [\n            "Ti\xe1\xba\xbfng Vi\xe1\xbb\x87t",\n            "Vietnamese"\n        ],\n        "zh-CN": [\n            "\xe4\xb8\xad\xe6\x96\x87 (\xe4\xb8\xad\xe5\x9b\xbd\xe5\xa4\xa7\xe9\x99\x86)",\n            "Chinese (PRC)"\n        ],\n        "zh-TW": [\n            "\xe4\xb8\xad\xe6\x96\x87 (\xe5\x8f\xb0\xe7\x81\xa3)",\n            "Chinese (Taiwan)"\n        ]\n    }\n}\n', 1266, 1267, 'character maps to <undefined>'). Please report to developers at https://github.com/duecredit/duecredit/issues (utils.py:192)

Environment

Python Executable: Conda
Python Version: Python 3.8
Operating System: Windows
HDMF Version: dev

Checklist

rly commented 3 years ago

Or maybe it didn't. Searching the error message results in a bug report that I posted before on duecredit! ha! https://github.com/duecredit/duecredit/issues/173

rly commented 3 years ago

The root error was fixed in dev branch of citeproc-py but there has not been a new release with the fix.

rly commented 10 months ago

This has been resolved upstream.