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hdng / clonevol

Inferring and visualizing clonal evolution in multi-sample cancer sequencing
GNU General Public License v3.0
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ERROR: No clonal models for sample using clonevol #13

Closed gyfangel closed 6 years ago

gyfangel commented 6 years ago

Hello, I get the following error when running infer.clonal.models().

ERROR: No clonal models for sample: . Check data or remove this sample, then re-run.

I have got more SNVs using about 430 or 1500 SNVs as the input data.But the error stills appears.

And CNVs infect the VAF (about 7/40 SNVs with VAF closed to 1). Then how to solve this problem? I cannot remove the 7 SNVs for their importance. But I have input the CNV results when running sciClone.

I don't know how to choose the clonal model. So I tried both of them(polyclonal and monoclonal). But the error still appear.

I am very confused. And hope for your reply and help. Thank you. Gao

hdng commented 6 years ago

Duplicated, see https://github.com/hdng/clonevol/issues/12