hdng
commented
6 years ago Just pushed the fix. Could you check back? Thanks.
Closed crazyhottommy closed 6 years ago
hdng
commented
6 years ago Just pushed the fix. Could you check back? Thanks.
crazyhottommy
commented
6 years ago still error.
Session info ---------------------------------------------------------------------------------
setting value
version R version 3.4.2 (2017-09-28)
system x86_64, darwin15.6.0
ui RStudio (1.0.153)
language (EN)
collate en_US.UTF-8
tz America/Chicago
date 2018-02-07
Packages -------------------------------------------------------------------------------------
package * version date source
AnnotationDbi 1.38.2 2017-07-27 cran (@1.38.2)
assertthat 0.2.0 2017-04-11 cran (@0.2.0)
backports 1.1.2 2017-12-13 cran (@1.1.2)
base * 3.4.2 2017-10-04 local
bindr 0.1 2016-11-13 cran (@0.1)
bindrcpp * 0.2 2017-06-17 cran (@0.2)
Biobase 2.36.2 2017-05-04 cran (@2.36.2)
BiocGenerics 0.22.1 2017-10-07 cran (@0.22.1)
BiocInstaller 1.28.0 2017-10-31 Bioconductor
bit 1.1-12 2014-04-09 cran (@1.1-12)
bit64 0.9-7 2017-05-08 cran (@0.9-7)
blob 1.1.0 2017-06-17 cran (@1.1.0)
broom 0.4.2 2017-02-13 CRAN (R 3.4.0)
cellranger 1.1.0 2016-07-27 CRAN (R 3.4.0)
circlize 0.4.1 2017-07-19 cran (@0.4.1)
clipr 0.4.0 2017-11-03 CRAN (R 3.4.2)
clonevol * 0.99.10 2018-02-07 Github (hdng/clonevol@ced265d)
colorspace 1.3-2 2016-12-14 cran (@1.3-2)
compiler 3.4.2 2017-10-04 local
curl 3.0 2017-10-06 CRAN (R 3.4.2)
datapasta 3.0.0 2018-01-24 CRAN (R 3.4.3)
datasets * 3.4.2 2017-10-04 local
DBI 0.7 2017-06-18 cran (@0.7)
devtools * 1.13.3 2017-08-02 CRAN (R 3.4.1)
digest 0.6.12 2017-01-27 CRAN (R 3.4.0)
dplyr * 0.7.4 2017-09-28 cran (@0.7.4)
evaluate 0.10.1 2017-06-24 CRAN (R 3.4.1)
fishplot 0.4 2018-02-06 Github (chrisamiller/fishplot@8d25f71)
forcats * 0.2.0 2017-01-23 CRAN (R 3.4.0)
foreign 0.8-69 2017-06-22 CRAN (R 3.4.2)
ggplot2 * 2.2.1 2016-12-30 cran (@2.2.1)
ggpubr * 0.1.5 2017-08-22 CRAN (R 3.4.1)
git2r 0.19.0 2017-07-19 CRAN (R 3.4.1)
GlobalOptions 0.0.12 2017-05-21 cran (@0.0.12)
glue 1.2.0 2017-10-29 cran (@1.2.0)
graph 1.54.0 2017-04-25 Bioconductor
graphics * 3.4.2 2017-10-04 local
grDevices * 3.4.2 2017-10-04 local
grid * 3.4.2 2017-10-04 local
gridBase * 0.4-7 2014-02-24 CRAN (R 3.4.0)
gridExtra * 2.3 2017-09-09 cran (@2.3)
gtable 0.2.0 2016-02-26 cran (@0.2.0)
haven 1.1.0 2017-07-09 CRAN (R 3.4.1)
here * 0.1 2017-05-28 CRAN (R 3.4.0)
highr 0.6 2016-05-09 CRAN (R 3.4.0)
hms 0.3 2016-11-22 CRAN (R 3.4.0)
httr 1.3.1 2017-08-20 CRAN (R 3.4.1)
igraph * 1.1.2 2017-07-21 CRAN (R 3.4.1)
IRanges 2.10.5 2017-10-08 cran (@2.10.5)
jsonlite 1.5 2017-06-01 CRAN (R 3.4.0)
knitr 1.19 2018-01-29 cran (@1.19)
labeling 0.3 2014-08-23 cran (@0.3)
lattice 0.20-35 2017-03-25 CRAN (R 3.4.2)
lazyeval 0.2.1 2017-10-29 cran (@0.2.1)
lubridate 1.6.0 2016-09-13 CRAN (R 3.4.0)
magrittr * 1.5 2014-11-22 cran (@1.5)
memoise 1.1.0 2017-04-21 CRAN (R 3.4.0)
methods * 3.4.2 2017-10-04 local
mnormt 1.5-5 2016-10-15 CRAN (R 3.4.0)
modelr 0.1.1 2017-07-24 CRAN (R 3.4.1)
munsell 0.4.3 2016-02-13 cran (@0.4.3)
nlme 3.1-131 2017-02-06 CRAN (R 3.4.2)
packcircles * 0.3.1 2018-01-09 CRAN (R 3.4.3)
parallel 3.4.2 2017-10-04 local
pkgconfig 2.0.1 2017-03-21 cran (@2.0.1)
plyr 1.8.4 2016-06-08 cran (@1.8.4)
psych 1.7.8 2017-09-09 CRAN (R 3.4.2)
purrr * 0.2.4 2017-10-18 CRAN (R 3.4.2)
R6 2.2.2 2017-06-17 CRAN (R 3.4.0)
RBGL 1.52.0 2017-04-25 Bioconductor
RColorBrewer 1.1-2 2014-12-07 cran (@1.1-2)
Rcpp 0.12.14 2017-11-23 cran (@0.12.14)
readr * 1.1.1 2017-05-16 CRAN (R 3.4.0)
readxl 1.0.0 2017-04-18 CRAN (R 3.4.0)
reshape2 * 1.4.2 2016-10-22 cran (@1.4.2)
rlang 0.1.4 2017-11-05 cran (@0.1.4)
rprojroot 1.2 2017-01-16 CRAN (R 3.4.0)
RSQLite 2.0 2017-06-19 cran (@2.0)
rstudioapi 0.7 2017-09-07 CRAN (R 3.4.1)
rvest 0.3.2 2016-06-17 CRAN (R 3.4.0)
S4Vectors 0.14.7 2017-10-08 cran (@0.14.7)
scales 0.5.0 2017-08-24 cran (@0.5.0)
shape 1.4.3 2017-08-16 cran (@1.4.3)
stats * 3.4.2 2017-10-04 local
stats4 3.4.2 2017-10-04 local
stringi 1.1.6 2017-11-17 cran (@1.1.6)
stringr * 1.2.0 2017-02-18 cran (@1.2.0)
tibble * 1.3.4 2017-08-22 cran (@1.3.4)
tidyr * 0.7.2 2017-10-16 cran (@0.7.2)
tidyselect 0.2.3 2017-11-06 cran (@0.2.3)
tidyverse * 1.1.1 2017-01-27 CRAN (R 3.4.0)
tools 3.4.2 2017-10-04 local
UpSetR * 1.3.3 2017-10-19 Github (hms-dbmi/UpSetR@67d3ea9)
utils * 3.4.2 2017-10-04 local
Vennerable * 3.1.0.9000 2017-10-12 Github (js229/Vennerable@46057c9)
withr 2.0.0 2017-07-28 CRAN (R 3.4.1)
xml2 1.1.1 2017-01-24 CRAN (R 3.4.0)
yaml 2.1.16 2017-12-12 cran (@2.1.16) I think it is fixed now.
crazyhottommy
commented
6 years ago now the function exported, but a different error:
fishes = createFishPlotObjects(f)
[1] 1
Error in createFishObject(results$cell.fractions[[i]], parents = as.integer(results$parents[[i]]), :
could not find function "createFishObject"createFishObject actually belongs to the fishplot package. I've just required it in the code.
crazyhottommy
commented
6 years ago working now. thanks!
installed from github: want to use with fishplot.
Thanks.