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hdng / clonevol

Inferring and visualizing clonal evolution in multi-sample cancer sequencing
GNU General Public License v3.0
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what if you do not have driver event and gene information? #31

Open owyl2 opened 5 years ago

owyl2 commented 5 years ago

Hi,

For my data, I have only have CCF, VAF, cluster, and mutation location data. I do not have column "is.driver" or "gene". Therefore, I cannot map to driver events (transfer.events.to.consensus.trees) nor convert to branched-based trees (convert.consensus.tree.clone.to.branch).

Then, in step 5: Visualizing the results, what kind of "y" should I use to obtain results as the figure 3 in a tutorial? I tried to use y from infer.clonal.models but it does not give me the results as figure 3.

Thank you for your help!

PiscesdanAT commented 4 years ago

I ran the pipleine without driver events, and it worked fine. I just skipped mapping the driver events and omitted certain parameters in step 5.