For my data, I have only have CCF, VAF, cluster, and mutation location data. I do not have column "is.driver" or "gene". Therefore, I cannot map to driver events (transfer.events.to.consensus.trees) nor convert to branched-based trees (convert.consensus.tree.clone.to.branch).
Then, in step 5: Visualizing the results, what kind of "y" should I use to obtain results as the figure 3 in a tutorial? I tried to use y from infer.clonal.models but it does not give me the results as figure 3.
Hi,
For my data, I have only have CCF, VAF, cluster, and mutation location data. I do not have column "is.driver" or "gene". Therefore, I cannot map to driver events (transfer.events.to.consensus.trees) nor convert to branched-based trees (convert.consensus.tree.clone.to.branch).
Then, in step 5: Visualizing the results, what kind of "y" should I use to obtain results as the figure 3 in a tutorial? I tried to use y from infer.clonal.models but it does not give me the results as figure 3.
Thank you for your help!