In the function infer.clonal.models(), there is the option to specify cluster.col.name (default = 'cluster'), which I've been naming 'cluster_id'. But in the code where infer.clonal.models() calls on generate.boot, cluster.col.name isn't specified and then defaults to 'cluster':
Error in generate.boot(variants, vaf.col.names = vaf.col.names, depth.col.names = depth.col.names, :
Input error: cluster column name does not appear in variants file.
I think the cluster.col.name=cluster.col.name option is missing from generate.boot()? Changing my column name to the default 'cluster' fixes this error.
In the function infer.clonal.models(), there is the option to specify cluster.col.name (default = 'cluster'), which I've been naming 'cluster_id'. But in the code where infer.clonal.models() calls on generate.boot, cluster.col.name isn't specified and then defaults to 'cluster':
Leading to this error:
I think the cluster.col.name=cluster.col.name option is missing from generate.boot()? Changing my column name to the default 'cluster' fixes this error.
Thanks for a very useful package!