search

hdng / clonevol

Inferring and visualizing clonal evolution in multi-sample cancer sequencing
GNU General Public License v3.0
141 stars 45 forks source link

Data visualization when inferring a polyclonal model #50

Open Psrwnsr opened 3 years ago

Psrwnsr commented 3 years ago

Dear ClonEvol team & community I have an issue when visualizing the ClonEvol data, could you please give me some suggestion to solving these problem below? I already attached my results in the forum

  1. How to remove gene name of cluster 0 when inferring a polyclonal model? (The box plot model on the left)
  2. What does the length of each cluster in branch-based tree model means? also when inferring a polyclonal model, was the length of cluster 0 meaningful? (the blue line). For examples, the length based cancer initiation time? frequency? or it’s just an uncertainty line to fit a length of model? (The branch-based tree model on the right)
Screen Shot 2564-07-19 at 14 53 51

Thank you in advance for your help