hdr-bgnn / Morphology-analysis

Extract morphological characteristics from trait segmented fish

MIT License

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update the notebook with the trait_class changes #42

Closed thibaulttabarin closed 1 year ago

thibaulttabarin commented 1 year ago

Updated the Jupyter notebook mainly to correct the change of code related to the pull request https://github.com/hdr-bgnn/Morphology-analysis/pull/36. I have done a bit clean up but it is far from perfect. The main objective was to make it functional if someone is interested playing with it.

thibaulttabarin commented 1 year ago

Vis_morpho.visualize_multi_bbox(["trunk", "c"]) failed : required a list of trait name "c" is not a trait name. "caudal_fin" is.

Visualize landmarks

img_landmark Old command doesn't work anymore I removed it. to visualize the landmark use measure_morpho.visualize_landmark() https://github.com/hdr-bgnn/Morphology-analysis/pull/42/commits/d3015a353f63f54feb243191f5e46efbb0f71b1d

it should now work bug free. ;) thanks for catching that