OutputWriter implementation

[mbelousov]

Output resulting scrubbed file

[owendw1]

Assuming OutputWriter is still meant to receive a GATEDocument, is it then supposed write certain attributes of the document to screen/file for summary purposes?

[mbelousov]

See #20

[mbelousov]

Need to integrate scrubber processor (See #7):

• In AnnotatedDocument.java (https://github.com/healtex/texscrubber/blob/feature/ner-integration/src/main/java/org/healtex/model/AnnotatedDocument.java) add method getScrubbedText() to replace all annotations (using scrubberprocessor that takes gate.Document as input and annotations [that should be "deid"] )
• In DeidentifiedDocumentWriter.java (https://github.com/healtex/texscrubber/blob/feature/ner-integration/src/main/java/org/healtex/batch/writer/DeidentifiedDocumentWriter.java) create a new .txt file in outputPath directory that would contain scrubbed text

You can find scrubber processor here: https://github.com/healtex/texscrubber/tree/feature/ScrubberProcessor