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heche-psb / wgd

wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
https://wgdv2.readthedocs.io/en/latest/
GNU General Public License v3.0
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viz running problem #21

Closed majssssa closed 4 months ago

majssssa commented 5 months ago

Hello, I encountered a very fast problem when using the viz module of wgd v2.0.25. According to the explanation on the official website, there will be a -fa option after v 2.2.24, but this option does not appear when I run wgd viz -h, and there will be an Error when I run it directly: no such option: -f

majssssa commented 5 months ago

Hello, I have solved the last problem. I installed v 2.0.24, and the -fa option appeared in the viz module. But when I run viz I get the following error message.Seems to be the numpy version of the problem, please tell me how to solve this.

AttributeError: module 'numpy' has no attribute 'float'. np.float was a deprecated alias for the builtin float. To avoid this error in existing code, use float by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use np.float64 here. The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations

heche-psb commented 5 months ago

Hi, thanks for posing the issue! The version of python and numpy that I tested with is python 3.8.3 and numpy 1.19.0. Higher version of numpy might indeed induce the issue you met, the AttributeError. Could you please install this specific version and try again?