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heche-psb / wgd

wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
https://wgdv2.readthedocs.io/en/latest/
GNU General Public License v3.0
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ks.svg of ksd output make some mistake #24

Closed Alalakikun closed 3 months ago

Alalakikun commented 3 months ago

Hello, thank you for this really useful too. I'm having some problems with the ksd output. Some contents of nohup is following

In-frame STOP codon in SC|017563.1.33 at position 33:36 Sequence length != multiple of 3 for SC|017563.1.393! Invalid codon AG in SC|017563.1.393 Sequence length != multiple of 3 for SC|017563.1.531! Invalid codon AG in SC|017563.1.531 Sequence length != multiple of 3 for SC|017563.1.578! In-frame STOP codon in SC|017563.1.578 at position 3:6 Sequence length != multiple of 3 for SC|017563.1.660! Invalid codon A in SC|017563.1.660 Sequence length != multiple of 3 for SC|017563.1.819! Invalid codon G in SC|017563.1.819 Sequence length != multiple of 3 for SC|017563.1.845! Invalid codon AG in SC|017563.1.845 Sequence length != multiple of 3 for SC|017563.1.918! In-frame STOP codon in SC|017563.1.918 at position 21:24 Sequence length != multiple of 3 for SC|017563.1.1125! Invalid codon G in SC|017563.1.1125 Sequence length != multiple of 3 for SC|017563.1.1131! In-frame STOP codon in SC|017563.1.1131 at position 231:234 Sequence length != multiple of 3 for SC|017563.1.1191! Invalid codon G in SC|017563.1.1191 Sequence length != multiple of 3 for SC|017563.1.1234! Invalid codon G in SC|017563.1.1234 Sequence length != multiple of 3 for SC|017563.1.1389! In-frame STOP codon in SC|017563.1.1389 at position 6:9 Sequence length != multiple of 3 for SC|017563.1.1510! Invalid codon AC in SC|017563.1.1510 Sequence length != multiple of 3 for SC|017563.1.1543! In-frame STOP codon in SC|017563.1.1543 at position 60:63 Sequence length != multiple of 3 for SC|017563.1.1614! In-frame STOP codon in SC|017563.1.1614 at position 12:15 Sequence length != multiple of 3 for SC|017563.1.1622! Invalid codon G in SC|017563.1.1622 Sequence length != multiple of 3 for SC|017563.1.1641! In-frame STOP codon in SC|017563.1.1641 at position 60:63 Sequence length != multiple of 3 for SC|017563.1.1643! In-frame STOP codon in SC|017563.1.1643 at position 9:12 Sequence length != multiple of 3 for SC|017563.1.1645! Invalid codon A in SC|017563.1.1645 Sequence length != multiple of 3 for SC|017563.1.2017! Invalid codon G in SC|017563.1.2017 Sequence length != multiple of 3 for SC|017562.1.28.1! Invalid codon G in SC|017562.1.28.1 Sequence length != multiple of 3 for SC|017562.1.364! In-frame STOP codon in SC|017562.1.364 at position 0:3 In-frame STOP codon in SC|017562.1.365 at position 3:6 Sequence length != multiple of 3 for SC|017562.1.398! Invalid codon GA in SC|017562.1.398 Sequence length != multiple of 3 for SC|017562.1.431! Invalid codon GG in SC|017562.1.431 Sequence length != multiple of 3 for SC|017562.1.438! Invalid codon G in SC|017562.1.438 Sequence length != multiple of 3 for SC|017562.1.503! Invalid codon G in SC|017562.1.503 Sequence length != multiple of 3 for SC|017562.1.695! Invalid codon AA in SC|017562.1.695 Sequence length != multiple of 3 for SC|017562.1.723! In-frame STOP codon in SC|017562.1.723 at position 15:18 Sequence length != multiple of 3 for SC|017562.1.763! In-frame STOP codon in SC|017562.1.763 at position 39:42 Sequence length != multiple of 3 for SC|017562.1.837! Invalid codon A in SC|017562.1.837 Sequence length != multiple of 3 for SC|017562.1.1015! Invalid codon A in SC|017562.1.1015 Sequence length != multiple of 3 for SC|017562.1.1019! In-frame STOP codon in SC|017562.1.1019 at position 0:3 Sequence length != multiple of 3 for SC|017562.1.1055! Invalid codon CT in SC|017562.1.1055 Sequence length != multiple of 3 for SC|017562.1.1128! Invalid codon G in SC|017562.1.1128 Sequence length != multiple of 3 for SC|017562.1.1173! In-frame STOP codon in SC|017562.1.1173 at position 18:21 Sequence length != multiple of 3 for SC|017562.1.1383! Invalid codon G in SC|017562.1.1383 Sequence length != multiple of 3 for SC|017562.1.1392! Invalid codon AA in SC|017562.1.1392 Sequence length != multiple of 3 for SC|017562.1.1417! In-frame STOP codon in SC|017562.1.1417 at position 123:126 Sequence length != multiple of 3 for SC|017562.1.1518! Invalid codon G in SC|017562.1.1518 Sequence length != multiple of 3 for SC|017562.1.1629! Invalid codon G in SC|017562.1.1629 Sequence length != multiple of 3 for SC|017562.1.1794! Invalid codon A in SC|017562.1.1794 Sequence length != multiple of 3 for SC|017562.1.1925! Invalid codon G in SC|017562.1.1925 Sequence length != multiple of 3 for SC|017562.1.2092.1! Invalid codon AG in SC|017562.1.2092.1 Sequence length != multiple of 3 for SC|017562.1.2356! In-frame STOP codon in SC|017562.1.2356 at position 603:606 Sequence length != multiple of 3 for SC|017562.1.2503! Invalid codon GA in SC|017562.1.2503 Sequence length != multiple of 3 for SC|017558.1.4! Invalid codon G in SC|017558.1.4 Sequence length != multiple of 3 for SC|017558.1.10! Invalid codon G in SC|017558.1.10 Sequence length != multiple of 3 for SC|017558.1.125! Invalid codon AC in SC|017558.1.125 Sequence length != multiple of 3 for SC|017558.1.126! In-frame STOP codon in SC|017558.1.126 at position 1314:1317 Sequence length != multiple of 3 for SC|017558.1.130! Invalid codon G in SC|017558.1.130 Sequence length != multiple of 3 for SC|017558.1.202! In-frame STOP codon in SC|017558.1.202 at position 3:6 Sequence length != multiple of 3 for SC|017558.1.286! Invalid codon G in SC|017558.1.286 Sequence length != multiple of 3 for SC|017558.1.309! Invalid codon G in SC|017558.1.309 Sequence length != multiple of 3 for SC|017558.1.384! Invalid codon A in SC|017558.1.384 Sequence length != multiple of 3 for SC|017558.1.484! Invalid codon G in SC|017558.1.484 Sequence length != multiple of 3 for SC|017558.1.523! Invalid codon A in SC|017558.1.523 Sequence length != multiple of 3 for SC|017558.1.613! Invalid codon G in SC|017558.1.613 Sequence length != multiple of 3 for SC|017558.1.729! Invalid codon A in SC|017558.1.729 Sequence length != multiple of 3 for SC|017558.1.738! Invalid codon AA in SC|017558.1.738 Sequence length != multiple of 3 for SC|017558.1.739! Invalid codon G in SC|017558.1.739 Sequence length != multiple of 3 for SC|017558.1.858! In-frame STOP codon in SC|017558.1.858 at position 30:33 Sequence length != multiple of 3 for SC|017558.1.954! Invalid codon AA in SC|017558.1.954 Sequence length != multiple of 3 for SC|017558.1.1147! In-frame STOP codon in SC|017558.1.1147 at position 24:27 Sequence length != multiple of 3 for SC|017558.1.1148! Invalid codon G in SC|017558.1.1148 Sequence length != multiple of 3 for SC|017558.1.1248! Invalid codon A in SC|017558.1.1248 Sequence length != multiple of 3 for SC|017558.1.1342! In-frame STOP codon in SC|017558.1.1342 at position 3:6 Sequence length != multiple of 3 for SC|017558.1.1373! Invalid codon G in SC|017558.1.1373 Sequence length != multiple of 3 for SC|017558.1.1464! Invalid codon GA in SC|017558.1.1464 Sequence length != multiple of 3 for SC|017558.1.1465! Invalid codon AA in SC|017558.1.1465 Sequence length != multiple of 3 for SC|017558.1.1476! Invalid codon A in SC|017558.1.1476 Sequence length != multiple of 3 for SC|017558.1.1507! In-frame STOP codon in SC|017558.1.1507 at position 384:387 Sequence length != multiple of 3 for SC|017558.1.1528! Invalid codon AA in SC|017558.1.1528 Sequence length != multiple of 3 for SC|017558.1.1555! In-frame STOP codon in SC|017558.1.1555 at position 33:36 Sequence length != multiple of 3 for SC|017558.1.1560! Invalid codon CG in SC|017558.1.1560 Sequence length != multiple of 3 for SC|017558.1.1591! Invalid codon TG in SC|017558.1.1591 Sequence length != multiple of 3 for SC|017558.1.1686! Invalid codon AA in SC|017558.1.1686 Sequence length != multiple of 3 for SC|017558.1.1810! Invalid codon AG in SC|017558.1.1810 Sequence length != multiple of 3 for SC|017558.1.1822! Invalid codon A in SC|017558.1.1822 Sequence length != multiple of 3 for SC|017558.1.2121! In-frame STOP codon in SC|017558.1.2121 at position 27:30 Sequence length != multiple of 3 for SC|017558.1.2144! Invalid codon AC in SC|017558.1.2144 Sequence length != multiple of 3 for SC|017558.1.2186! Invalid codon G in SC|017558.1.2186 Sequence length != multiple of 3 for SC|017558.1.2234! Invalid codon CA in SC|017558.1.2234 Sequence length != multiple of 3 for SC|017558.1.2242! Invalid codon AG in SC|017558.1.2242 Sequence length != multiple of 3 for SC|017558.1.2297! Invalid codon G in SC|017558.1.2297 Sequence length != multiple of 3 for SC|017558.1.2415! Invalid codon G in SC|017558.1.2415 Sequence length != multiple of 3 for SC|017558.1.2459! In-frame STOP codon in SC|017558.1.2459 at position 93:96 Sequence length != multiple of 3 for SC|017558.1.2697! Invalid codon TA in SC|017558.1.2697 Sequence length != multiple of 3 for SC|017558.1.2711! In-frame STOP codon in SC|017558.1.2711 at position 150:153 Sequence length != multiple of 3 for SC|017558.1.2786! Invalid codon AT in SC|017558.1.2786 Sequence length != multiple of 3 for SC|017558.1.2859! In-frame STOP codon in SC|017558.1.2859 at position 39:42 In-frame STOP codon in SC|017571.1.40 at position 153:156 Sequence length != multiple of 3 for SC|017571.1.133! In-frame STOP codon in SC|017571.1.133 at position 15:18 Sequence length != multiple of 3 for SC|017571.1.189! Invalid codon GT in SC|017571.1.189 Sequence length != multiple of 3 for SC|017571.1.441! Invalid codon T in SC|017571.1.441 Sequence length != multiple of 3 for SC|017571.1.464.1! Invalid codon G in SC|017571.1.464.1 Sequence length != multiple of 3 for SC|017571.1.642! Invalid codon A in SC|017571.1.642 Sequence length != multiple of 3 for SC|017571.1.645! Invalid codon AG in SC|017571.1.645 Sequence length != multiple of 3 for SC|017571.1.646! Invalid codon GG in SC|017571.1.646 Sequence length != multiple of 3 for SC|017571.1.693! Invalid codon G in SC|017571.1.693 Sequence length != multiple of 3 for SC|017571.1.718! Invalid codon G in SC|017571.1.718 Sequence length != multiple of 3 for SC|017571.1.782! Invalid codon TT in SC|017571.1.782 Sequence length != multiple of 3 for SC|017571.1.1016! Invalid codon G in SC|017571.1.1016 Sequence length != multiple of 3 for SC|017571.1.1056! In-frame STOP codon in SC|017571.1.1056 at position 261:264 Sequence length != multiple of 3 for SC|017571.1.1124! Invalid codon G in SC|017571.1.1124 Sequence length != multiple of 3 for SC|017571.1.1210! Invalid codon AG in SC|017571.1.1210 Sequence length != multiple of 3 for SC|017571.1.1257! In-frame STOP codon in SC|017571.1.1257 at position 156:159 Sequence length != multiple of 3 for SC|017571.1.1259! In-frame STOP codon in SC|017571.1.1259 at position 285:288 Sequence length != multiple of 3 for SC|017571.1.1260! Invalid codon G in SC|017571.1.1260 Sequence length != multiple of 3 for SC|017571.1.1298! Invalid codon A in SC|017571.1.1298 In-frame STOP codon in SC|017571.1.1319 at position 138:141 Sequence length != multiple of 3 for SC|017571.1.1396! In-frame STOP codon in SC|017571.1.1396 at position 612:615 Sequence length != multiple of 3 for SC|017571.1.1397! In-frame STOP codon in SC|017571.1.1397 at position 69:72 Sequence length != multiple of 3 for SC|017571.1.1414! In-frame STOP codon in SC|017571.1.1414 at position 54:57 Sequence length != multiple of 3 for SC|017571.1.1562! Invalid codon A in SC|017571.1.1562 Sequence length != multiple of 3 for SC|017571.1.1983! Invalid codon AG in SC|017571.1.1983 Sequence length != multiple of 3 for SC|017571.1.1989! Invalid codon AG in SC|017571.1.1989 Sequence length != multiple of 3 for SC|017571.1.1991! In-frame STOP codon in SC|017571.1.1991 at position 3:6 Sequence length != multiple of 3 for SC|017571.1.2014! In-frame STOP codon in SC|017571.1.2014 at position 378:381 Sequence length != multiple of 3 for SC|017571.1.2016! In-frame STOP codon in SC|017571.1.2016 at position 33:36 Sequence length != multiple of 3 for SC|017571.1.2017! Invalid codon CT in SC|017571.1.2017 Sequence length != multiple of 3 for SC|017556.1.114! Invalid codon A in SC|017556.1.114 Sequence length != multiple of 3 for SC|017556.1.134! In-frame STOP codon in SC|017556.1.134 at position 309:312 Sequence length != multiple of 3 for SC|017556.1.197! Invalid codon A in SC|017556.1.197 Sequence length != multiple of 3 for SC|017556.1.198! In-frame STOP codon in SC|017556.1.198 at position 30:33 Sequence length != multiple of 3 for SC|017556.1.211.8! Invalid codon A in SC|017556.1.211.8 Sequence length != multiple of 3 for SC|017556.1.216! In-frame STOP codon in SC|017556.1.216 at position 99:102 Sequence length != multiple of 3 for SC|017556.1.230! In-frame STOP codon in SC|017556.1.230 at position 36:39 Sequence length != multiple of 3 for SC|017556.1.272! Invalid codon G in SC|017556.1.272 Sequence length != multiple of 3 for SC|017556.1.299! Invalid codon AG in SC|017556.1.299 Sequence length != multiple of 3 for SC|017556.1.391! In-frame STOP codon in SC|017556.1.391 at position 534:537 Sequence length != multiple of 3 for SC|017556.1.528! In-frame STOP codon in SC|017556.1.528 at position 69:72 Sequence length != multiple of 3 for SC|017556.1.567! In-frame STOP codon in SC|017556.1.567 at position 39:42 Sequence length != multiple of 3 for SC|017556.1.651! Invalid codon AG in SC|017556.1.651 Sequence length != multiple of 3 for SC|017556.1.652! Invalid codon G in SC|017556.1.652 Sequence length != multiple of 3 for SC|017556.1.679! In-frame STOP codon in SC|017556.1.679 at position 15:18 Sequence length != multiple of 3 for SC|017556.1.704! Invalid codon CT in SC|017556.1.704 Sequence length != multiple of 3 for SC|017556.1.709! Invalid codon AA in SC|017556.1.709 Sequence length != multiple of 3 for SC|017556.1.802! Invalid codon G in SC|017556.1.802 Sequence length != multiple of 3 for SC|017556.1.842! Invalid codon A in SC|017556.1.842 Sequence length != multiple of 3 for SC|017556.1.943! In-frame STOP codon in SC|017556.1.943 at position 336:339 Sequence length != multiple of 3 for SC|017556.1.1033! In-frame STOP codon in SC|017556.1.1033 at position 36:39 Sequence length != multiple of 3 for SC|017556.1.1042! In-frame STOP codon in SC|017556.1.1042 at position 99:102 Sequence length != multiple of 3 for SC|017556.1.1622! Invalid codon A in SC|017556.1.1622 Sequence length != multiple of 3 for SC|017556.1.1623! In-frame STOP codon in SC|017556.1.1623 at position 75:78 Sequence length != multiple of 3 for SC|017556.1.1624! Invalid codon G in SC|017556.1.1624 Sequence length != multiple of 3 for SC|017556.1.1790! Invalid codon A in SC|017556.1.1790 Sequence length != multiple of 3 for SC|017556.1.1944! Invalid codon A in SC|017556.1.1944 Sequence length != multiple of 3 for SC|017556.1.2016! Invalid codon AG in SC|017556.1.2016 Sequence length != multiple of 3 for SC|017556.1.2034! Invalid codon AG in SC|017556.1.2034 Sequence length != multiple of 3 for SC|017556.1.2131! Invalid codon C in SC|017556.1.2131 Sequence length != multiple of 3 for SC|017556.1.2265! Invalid codon CT in SC|017556.1.2265 Sequence length != multiple of 3 for SC|017556.1.2417! Invalid codon GA in SC|017556.1.2417 Sequence length != multiple of 3 for SC|017556.1.2493! In-frame STOP codon in SC|017556.1.2493 at position 24:27 Sequence length != multiple of 3 for SC|017556.1.2591! Invalid codon CT in SC|017556.1.2591 Sequence length != multiple of 3 for SC|017556.1.2762.1! Invalid codon AG in SC|017556.1.2762.1 Sequence length != multiple of 3 for SC|017556.1.2913! Invalid codon AG in SC|017556.1.2913 Sequence length != multiple of 3 for SC|017556.1.2973! Invalid codon G in SC|017556.1.2973 Sequence length != multiple of 3 for SC|017561.1.31! Invalid codon AA in SC|017561.1.31 Sequence length != multiple of 3 for SC|017561.1.151! In-frame STOP codon in SC|017561.1.151 at position 3:6 Sequence length != multiple of 3 for SC|017561.1.179! In-frame STOP codon in SC|017561.1.179 at position 27:30 Sequence length != multiple of 3 for SC|017561.1.213! Invalid codon T in SC|017561.1.213 Sequence length != multiple of 3 for SC|017561.1.351! Invalid codon AG in SC|017561.1.351 Sequence length != multiple of 3 for SC|017561.1.611! Invalid codon GG in SC|017561.1.611 Sequence length != multiple of 3 for SC|017561.1.844! Invalid codon AG in SC|017561.1.844 Sequence length != multiple of 3 for SC|017561.1.960! In-frame STOP codon in SC|017561.1.960 at position 36:39 Sequence length != multiple of 3 for SC|017561.1.1003! In-frame STOP codon in SC|017561.1.1003 at position 9:12 Sequence length != multiple of 3 for SC|017561.1.1516! In-frame STOP codon in SC|017561.1.1516 at position 51:54 Sequence length != multiple of 3 for SC|017561.1.1593! Invalid codon G in SC|017561.1.1593 Sequence length != multiple of 3 for SC|017561.1.1595! In-frame STOP codon in SC|017561.1.1595 at position 144:147 Sequence length != multiple of 3 for SC|017561.1.1715! In-frame STOP codon in SC|017561.1.1715 at position 3:6 Sequence length != multiple of 3 for SC|017561.1.1776! In-frame STOP codon in SC|017561.1.1776 at position 18:21 Sequence length != multiple of 3 for SC|017561.1.1798! Invalid codon G in SC|017561.1.1798 Sequence length != multiple of 3 for SC|017561.1.1874! Invalid codon AG in SC|017561.1.1874 Sequence length != multiple of 3 for SC|017561.1.1883! Invalid codon A in SC|017561.1.1883 Sequence length != multiple of 3 for SC|017561.1.2154! Invalid codon G in SC|017561.1.2154 Sequence length != multiple of 3 for SC|017561.1.2203! Invalid codon G in SC|017561.1.2203 Sequence length != multiple of 3 for SC|017561.1.2347! Invalid codon AG in SC|017561.1.2347 Sequence length != multiple of 3 for SC|017561.1.2368! In-frame STOP codon in SC|017561.1.2368 at position 75:78 Sequence length != multiple of 3 for SC|017561.1.2387! Invalid codon G in SC|017561.1.2387 Sequence length != multiple of 3 for SC|017561.1.2391! In-frame STOP codon in SC|017561.1.2391 at position 6:9 Sequence length != multiple of 3 for SC|017561.1.2392! Invalid codon C in SC|017561.1.2392 Sequence length != multiple of 3 for SC|017567.1.16! Invalid codon G in SC|017567.1.16 Sequence length != multiple of 3 for SC|017567.1.19! Invalid codon A in SC|017567.1.19 Sequence length != multiple of 3 for SC|017567.1.60! Invalid codon A in SC|017567.1.60 Sequence length != multiple of 3 for SC|017567.1.73! Invalid codon TC in SC|017567.1.73 Sequence length != multiple of 3 for SC|017567.1.107! Invalid codon G in SC|017567.1.107 Sequence length != multiple of 3 for SC|017567.1.113! Invalid codon G in SC|017567.1.113 Sequence length != multiple of 3 for SC|017567.1.180! Invalid codon G in SC|017567.1.180 Sequence length != multiple of 3 for SC|017567.1.181! Invalid codon G in SC|017567.1.181 Sequence length != multiple of 3 for SC|017567.1.207! In-frame STOP codon in SC|017567.1.207 at position 9:12 Sequence length != multiple of 3 for SC|017567.1.439! Invalid codon G in SC|017567.1.439 Sequence length != multiple of 3 for SC|017567.1.622! Invalid codon T in SC|017567.1.622 Sequence length != multiple of 3 for SC|017567.1.860! In-frame STOP codon in SC|017567.1.860 at position 24:27 Sequence length != multiple of 3 for SC|017567.1.861! In-frame STOP codon in SC|017567.1.861 at position 24:27 Sequence length != multiple of 3 for SC|017567.1.864! In-frame STOP codon in SC|017567.1.864 at position 0:3 Sequence length != multiple of 3 for SC|017567.1.865! In-frame STOP codon in SC|017567.1.865 at position 39:42 Sequence length != multiple of 3 for SC|017567.1.891! Invalid codon C in SC|017567.1.891 Sequence length != multiple of 3 for SC|017567.1.897! In-frame STOP codon in SC|017567.1.897 at position 18:21 Sequence length != multiple of 3 for SC|017567.1.1059! Invalid codon GT in SC|017567.1.1059 Sequence length != multiple of 3 for SC|017567.1.1212! Invalid codon CG in SC|017567.1.1212 Sequence length != multiple of 3 for SC|017567.1.1295! In-frame STOP codon in SC|017567.1.1295 at position 3:6 Sequence length != multiple of 3 for SC|017567.1.1308! Invalid codon TG in SC|017567.1.1308 Sequence length != multiple of 3 for SC|017567.1.1592! In-frame STOP codon in SC|017567.1.1592 at position 6:9 Sequence length != multiple of 3 for SC|017567.1.1861! Invalid codon CA in SC|017567.1.1861 Sequence length != multiple of 3 for SC|017568.1.20! Invalid codon A in SC|017568.1.20 Sequence length != multiple of 3 for SC|017568.1.89! Invalid codon AG in SC|017568.1.89 Sequence length != multiple of 3 for SC|017568.1.300! In-frame STOP codon in SC|017568.1.300 at position 39:42 Sequence length != multiple of 3 for SC|017568.1.415! In-frame STOP codon in SC|017568.1.415 at position 6:9 Sequence length != multiple of 3 for SC|017568.1.453! In-frame STOP codon in SC|017568.1.453 at position 3:6 Sequence length != multiple of 3 for SC|017568.1.645! In-frame STOP codon in SC|017568.1.645 at position 15:18 Sequence length != multiple of 3 for SC|017568.1.730! Invalid codon AA in SC|017568.1.730 Sequence length != multiple of 3 for SC|017568.1.944.1! Invalid codon A in SC|017568.1.944.1 Sequence length != multiple of 3 for SC|017568.1.1271! Invalid codon G in SC|017568.1.1271 Sequence length != multiple of 3 for SC|017568.1.1290! Invalid codon G in SC|017568.1.1290 Sequence length != multiple of 3 for SC|017568.1.1291! In-frame STOP codon in SC|017568.1.1291 at position 3:6 Sequence length != multiple of 3 for SC|017568.1.1318! In-frame STOP codon in SC|017568.1.1318 at position 9:12 Sequence length != multiple of 3 for SC|017568.1.1795! In-frame STOP codon in SC|017568.1.1795 at position 48:51 Sequence length != multiple of 3 for SC|017568.1.1857! In-frame STOP codon in SC|017568.1.1857 at position 231:234 Sequence length != multiple of 3 for SC|017568.1.1967! In-frame STOP codon in SC|017568.1.1967 at position 39:42 Sequence length != multiple of 3 for SC|017572.1.255! Invalid codon A in SC|017572.1.255 Sequence length != multiple of 3 for SC|017572.1.277! Invalid codon G in SC|017572.1.277 Sequence length != multiple of 3 for SC|017572.1.336! In-frame STOP codon in SC|017572.1.336 at position 600:603 Sequence length != multiple of 3 for SC|017572.1.385! In-frame STOP codon in SC|017572.1.385 at position 60:63 Sequence length != multiple of 3 for SC|017572.1.432! Invalid codon G in SC|017572.1.432 Sequence length != multiple of 3 for SC|017572.1.532! Invalid codon G in SC|017572.1.532 Sequence length != multiple of 3 for SC|017572.1.595! Invalid codon A in SC|017572.1.595 Sequence length != multiple of 3 for SC|017572.1.691! Invalid codon A in SC|017572.1.691 Sequence length != multiple of 3 for SC|017572.1.957! Invalid codon G in SC|017572.1.957 Sequence length != multiple of 3 for SC|017572.1.1082! In-frame STOP codon in SC|017572.1.1082 at position 48:51 Sequence length != multiple of 3 for SC|017572.1.1100! Invalid codon G in SC|017572.1.1100 Sequence length != multiple of 3 for SC|017572.1.1141! Invalid codon TG in SC|017572.1.1141 Sequence length != multiple of 3 for SC|017572.1.1168! Invalid codon G in SC|017572.1.1168 Sequence length != multiple of 3 for SC|017572.1.1228! Invalid codon G in SC|017572.1.1228 Sequence length != multiple of 3 for SC|017572.1.1257! Invalid codon G in SC|017572.1.1257 Sequence length != multiple of 3 for SC|017572.1.1347! In-frame STOP codon in SC|017572.1.1347 at position 111:114 Sequence length != multiple of 3 for SC|017572.1.1352! In-frame STOP codon in SC|017572.1.1352 at position 9:12 Sequence length != multiple of 3 for SC|017572.1.1365! Invalid codon AG in SC|017572.1.1365 Sequence length != multiple of 3 for SC|017572.1.1388! Invalid codon A in SC|017572.1.1388 Sequence length != multiple of 3 for SC|017572.1.1644! Invalid codon AG in SC|017572.1.1644 Sequence length != multiple of 3 for SC|017572.1.1645! In-frame STOP codon in SC|017572.1.1645 at position 57:60 Sequence length != multiple of 3 for SC|017572.1.1649! Invalid codon AT in SC|017572.1.1649 Sequence length != multiple of 3 for SC|017572.1.1714! Invalid codon AA in SC|017572.1.1714 Sequence length != multiple of 3 for SC|017572.1.1724! Invalid codon CT in SC|017572.1.1724 Sequence length != multiple of 3 for SC|017572.1.1726! In-frame STOP codon in SC|017572.1.1726 at position 141:144 Sequence length != multiple of 3 for SC|017572.1.1742! Invalid codon A in SC|017572.1.1742 Sequence length != multiple of 3 for SC|017572.1.1780! Invalid codon G in SC|017572.1.1780 Sequence length != multiple of 3 for SC|017572.1.1785! Invalid codon G in SC|017572.1.1785 Sequence length != multiple of 3 for SC|017564.1.20! Invalid codon GA in SC|017564.1.20 Sequence length != multiple of 3 for SC|017564.1.30! Invalid codon GA in SC|017564.1.30 Sequence length != multiple of 3 for SC|017564.1.68! In-frame STOP codon in SC|017564.1.68 at position 93:96 Sequence length != multiple of 3 for SC|017564.1.146! In-frame STOP codon in SC|017564.1.146 at position 54:57 Sequence length != multiple of 3 for SC|017564.1.306! Invalid codon AA in SC|017564.1.306 Sequence length != multiple of 3 for SC|017564.1.332! In-frame STOP codon in SC|017564.1.332 at position 42:45 Sequence length != multiple of 3 for SC|017564.1.361! Invalid codon GA in SC|017564.1.361 Sequence length != multiple of 3 for SC|017564.1.462! Invalid codon AG in SC|017564.1.462 Sequence length != multiple of 3 for SC|017564.1.579! Invalid codon G in SC|017564.1.579 Sequence length != multiple of 3 for SC|017564.1.613! In-frame STOP codon in SC|017564.1.613 at position 480:483 Sequence length != multiple of 3 for SC|017564.1.798! Invalid codon AC in SC|017564.1.798 Sequence length != multiple of 3 for SC|017564.1.1131! Invalid codon GG in SC|017564.1.1131 Sequence length != multiple of 3 for SC|017564.1.1227! Invalid codon G in SC|017564.1.1227 Sequence length != multiple of 3 for SC|017564.1.1340! Invalid codon A in SC|017564.1.1340 Sequence length != multiple of 3 for SC|017564.1.1424! Invalid codon TC in SC|017564.1.1424 Sequence length != multiple of 3 for SC|017564.1.1486! In-frame STOP codon in SC|017564.1.1486 at position 3:6 Sequence length != multiple of 3 for SC|017564.1.1493! Invalid codon GT in SC|017564.1.1493 Sequence length != multiple of 3 for SC|017564.1.1612! Invalid codon T in SC|017564.1.1612 Sequence length != multiple of 3 for SC|017564.1.1654! Invalid codon A in SC|017564.1.1654 Sequence length != multiple of 3 for SC|017564.1.1683! In-frame STOP codon in SC|017564.1.1683 at position 45:48 Sequence length != multiple of 3 for SC|017564.1.1755! Invalid codon AG in SC|017564.1.1755 Sequence length != multiple of 3 for SC|017564.1.1759! In-frame STOP codon in SC|017564.1.1759 at position 111:114 Sequence length != multiple of 3 for SC|017564.1.1812! In-frame STOP codon in SC|017564.1.1812 at position 24:27 Sequence length != multiple of 3 for SC|017564.1.2005! In-frame STOP codon in SC|017564.1.2005 at position 36:39 Sequence length != multiple of 3 for SC|017565.1.46! Invalid codon AA in SC|017565.1.46 Sequence length != multiple of 3 for SC|017565.1.61! In-frame STOP codon in SC|017565.1.61 at position 12:15 Sequence length != multiple of 3 for SC|017565.1.98! In-frame STOP codon in SC|017565.1.98 at position 60:63 Sequence length != multiple of 3 for SC|017565.1.338! Invalid codon GT in SC|017565.1.338 Sequence length != multiple of 3 for SC|017565.1.354! Invalid codon A in SC|017565.1.354 Sequence length != multiple of 3 for SC|017565.1.377! Invalid codon G in SC|017565.1.377 Sequence length != multiple of 3 for SC|017565.1.453! Invalid codon T in SC|017565.1.453 Sequence length != multiple of 3 for SC|017565.1.523.4! Invalid codon G in SC|017565.1.523.4 Sequence length != multiple of 3 for SC|017565.1.535! Invalid codon G in SC|017565.1.535 Sequence length != multiple of 3 for SC|017565.1.593! Invalid codon AT in SC|017565.1.593 Sequence length != multiple of 3 for SC|017565.1.685! Invalid codon A in SC|017565.1.685 Sequence length != multiple of 3 for SC|017565.1.867! Invalid codon AA in SC|017565.1.867 Sequence length != multiple of 3 for SC|017565.1.889! Invalid codon G in SC|017565.1.889 Sequence length != multiple of 3 for SC|017565.1.1095! In-frame STOP codon in SC|017565.1.1095 at position 183:186 Sequence length != multiple of 3 for SC|017565.1.1113! In-frame STOP codon in SC|017565.1.1113 at position 78:81 Sequence length != multiple of 3 for SC|017565.1.1118! Invalid codon AG in SC|017565.1.1118 Sequence length != multiple of 3 for SC|017565.1.1337! Invalid codon GA in SC|017565.1.1337 Sequence length != multiple of 3 for SC|017565.1.1565! Invalid codon G in SC|017565.1.1565 Sequence length != multiple of 3 for SC|017565.1.1659! Invalid codon A in SC|017565.1.1659 Sequence length != multiple of 3 for SC|017565.1.1706! Invalid codon G in SC|017565.1.1706 Sequence length != multiple of 3 for SC|017565.1.1884! In-frame STOP codon in SC|017565.1.1884 at position 18:21 Sequence length != multiple of 3 for SC|017565.1.1989! Invalid codon A in SC|017565.1.1989 Sequence length != multiple of 3 for SC|017565.1.2223! In-frame STOP codon in SC|017565.1.2223 at position 15:18 Sequence length != multiple of 3 for SC|017560.1.109! Invalid codon G in SC|017560.1.109 Sequence length != multiple of 3 for SC|017560.1.134! In-frame STOP codon in SC|017560.1.134 at position 48:51 Sequence length != multiple of 3 for SC|017560.1.346! Invalid codon G in SC|017560.1.346 Sequence length != multiple of 3 for SC|017560.1.364! Invalid codon C in SC|017560.1.364 Sequence length != multiple of 3 for SC|017560.1.426! Invalid codon AT in SC|017560.1.426 Sequence length != multiple of 3 for SC|017560.1.475! Invalid codon G in SC|017560.1.475 In-frame STOP codon in SC|017560.1.499 at position 45:48 Sequence length != multiple of 3 for SC|017560.1.619! Invalid codon AG in SC|017560.1.619 Sequence length != multiple of 3 for SC|017560.1.728! Invalid codon G in SC|017560.1.728 Sequence length != multiple of 3 for SC|017560.1.866! Invalid codon AT in SC|017560.1.866 Sequence length != multiple of 3 for SC|017560.1.886! Invalid codon C in SC|017560.1.886 Sequence length != multiple of 3 for SC|017560.1.951! Invalid codon G in SC|017560.1.951 Sequence length != multiple of 3 for SC|017560.1.1185! Invalid codon G in SC|017560.1.1185 Sequence length != multiple of 3 for SC|017560.1.1242! Invalid codon A in SC|017560.1.1242 Sequence length != multiple of 3 for SC|017560.1.1248.1! Invalid codon A in SC|017560.1.1248.1 Sequence length != multiple of 3 for SC|017560.1.1413! Invalid codon AA in SC|017560.1.1413 Sequence length != multiple of 3 for SC|017560.1.1549! Invalid codon G in SC|017560.1.1549 Sequence length != multiple of 3 for SC|017560.1.1556! In-frame STOP codon in SC|017560.1.1556 at position 210:213 Sequence length != multiple of 3 for SC|017560.1.1720! Invalid codon G in SC|017560.1.1720 Sequence length != multiple of 3 for SC|017560.1.1828.2! Invalid codon GA in SC|017560.1.1828.2 Sequence length != multiple of 3 for SC|017560.1.1888! Invalid codon T in SC|017560.1.1888 Sequence length != multiple of 3 for SC|017560.1.1956! Invalid codon T in SC|017560.1.1956 Sequence length != multiple of 3 for SC|017560.1.2010! Invalid codon GA in SC|017560.1.2010 Sequence length != multiple of 3 for SC|017560.1.2088! In-frame STOP codon in SC|017560.1.2088 at position 171:174 Sequence length != multiple of 3 for SC|017560.1.2131! Invalid codon GA in SC|017560.1.2131 Sequence length != multiple of 3 for SC|017560.1.2182! Invalid codon AG in SC|017560.1.2182 Sequence length != multiple of 3 for SC|017560.1.2256! Invalid codon AG in SC|017560.1.2256 Sequence length != multiple of 3 for SC|017560.1.2308! In-frame STOP codon in SC|017560.1.2308 at position 57:60 Sequence length != multiple of 3 for SC|017560.1.2324! Invalid codon AC in SC|017560.1.2324 Sequence length != multiple of 3 for SC|017560.1.2359! In-frame STOP codon in SC|017560.1.2359 at position 0:3 Sequence length != multiple of 3 for SC|017560.1.2431! In-frame STOP codon in SC|017560.1.2431 at position 42:45 Sequence length != multiple of 3 for SC|017569.1.27! Invalid codon AA in SC|017569.1.27 Sequence length != multiple of 3 for SC|017569.1.190! In-frame STOP codon in SC|017569.1.190 at position 9:12 Sequence length != multiple of 3 for SC|017569.1.243! Invalid codon GA in SC|017569.1.243 Sequence length != multiple of 3 for SC|017569.1.270! Invalid codon GG in SC|017569.1.270 Sequence length != multiple of 3 for SC|017569.1.352! Invalid codon GG in SC|017569.1.352 Sequence length != multiple of 3 for SC|017569.1.510! In-frame STOP codon in SC|017569.1.510 at position 186:189 Sequence length != multiple of 3 for SC|017569.1.537! In-frame STOP codon in SC|017569.1.537 at position 33:36 Sequence length != multiple of 3 for SC|017569.1.818! Invalid codon AG in SC|017569.1.818 Sequence length != multiple of 3 for SC|017569.1.823! In-frame STOP codon in SC|017569.1.823 at position 33:36 Sequence length != multiple of 3 for SC|017569.1.832! In-frame STOP codon in SC|017569.1.832 at position 30:33 Sequence length != multiple of 3 for SC|017569.1.1211! In-frame STOP codon in SC|017569.1.1211 at position 36:39 Sequence length != multiple of 3 for SC|017569.1.1297! Invalid codon AA in SC|017569.1.1297 Sequence length != multiple of 3 for SC|017569.1.1411! In-frame STOP codon in SC|017569.1.1411 at position 294:297 Sequence length != multiple of 3 for SC|017569.1.1444! Invalid codon AA in SC|017569.1.1444 Sequence length != multiple of 3 for SC|017569.1.1474! In-frame STOP codon in SC|017569.1.1474 at position 84:87 Sequence length != multiple of 3 for SC|017569.1.1493! Invalid codon AC in SC|017569.1.1493 Sequence length != multiple of 3 for SC|017569.1.1579! Invalid codon CA in SC|017569.1.1579 Sequence length != multiple of 3 for SC|017569.1.1604! Invalid codon G in SC|017569.1.1604 Sequence length != multiple of 3 for SC|017569.1.1729! Invalid codon TT in SC|017569.1.1729 Sequence length != multiple of 3 for SC|017569.1.1868! In-frame STOP codon in SC|017569.1.1868 at position 195:198 Sequence length != multiple of 3 for SC|017569.1.1869! In-frame STOP codon in SC|017569.1.1869 at position 117:120 Sequence length != multiple of 3 for SC|017569.1.1958.1! Invalid codon G in SC|017569.1.1958.1 Sequence length != multiple of 3 for SC|017569.1.1983! Invalid codon AG in SC|017569.1.1983 Sequence length != multiple of 3 for SC|017566.1.63! Invalid codon G in SC|017566.1.63 Sequence length != multiple of 3 for SC|017566.1.179! Invalid codon T in SC|017566.1.179 Sequence length != multiple of 3 for SC|017566.1.180! In-frame STOP codon in SC|017566.1.180 at position 3:6 Sequence length != multiple of 3 for SC|017566.1.300! Invalid codon AA in SC|017566.1.300 Sequence length != multiple of 3 for SC|017566.1.351! Invalid codon G in SC|017566.1.351 Sequence length != multiple of 3 for SC|017566.1.360! Invalid codon AA in SC|017566.1.360 Sequence length != multiple of 3 for SC|017566.1.460! Invalid codon A in SC|017566.1.460 Sequence length != multiple of 3 for SC|017566.1.606! In-frame STOP codon in SC|017566.1.606 at position 12:15 Sequence length != multiple of 3 for SC|017566.1.660! Invalid codon AG in SC|017566.1.660 Sequence length != multiple of 3 for SC|017566.1.750! Invalid codon AG in SC|017566.1.750 Sequence length != multiple of 3 for SC|017566.1.759! Invalid codon G in SC|017566.1.759 Sequence length != multiple of 3 for SC|017566.1.779! In-frame STOP codon in SC|017566.1.779 at position 18:21 Sequence length != multiple of 3 for SC|017566.1.898! Invalid codon GG in SC|017566.1.898 Sequence length != multiple of 3 for SC|017566.1.903! In-frame STOP codon in SC|017566.1.903 at position 24:27 Sequence length != multiple of 3 for SC|017566.1.938.1! Invalid codon AT in SC|017566.1.938.1 Sequence length != multiple of 3 for SC|017566.1.1012! In-frame STOP codon in SC|017566.1.1012 at position 18:21 Sequence length != multiple of 3 for SC|017566.1.1093! Invalid codon G in SC|017566.1.1093 Sequence length != multiple of 3 for SC|017566.1.1209! Invalid codon A in SC|017566.1.1209 Sequence length != multiple of 3 for SC|017566.1.1233! Invalid codon TG in SC|017566.1.1233 Sequence length != multiple of 3 for SC|017566.1.1290! In-frame STOP codon in SC|017566.1.1290 at position 546:549 Sequence length != multiple of 3 for SC|017566.1.1367! Invalid codon AG in SC|017566.1.1367 Sequence length != multiple of 3 for SC|017566.1.1405! In-frame STOP codon in SC|017566.1.1405 at position 3:6 Sequence length != multiple of 3 for SC|017566.1.1419.1! Invalid codon GT in SC|017566.1.1419.1 Sequence length != multiple of 3 for SC|017566.1.1611! Invalid codon CG in SC|017566.1.1611 Sequence length != multiple of 3 for SC|017566.1.1715! In-frame STOP codon in SC|017566.1.1715 at position 24:27 Sequence length != multiple of 3 for SC|017566.1.1772! Invalid codon TG in SC|017566.1.1772 Sequence length != multiple of 3 for SC|017566.1.1797! Invalid codon AA in SC|017566.1.1797 Sequence length != multiple of 3 for SC|017566.1.1798! In-frame STOP codon in SC|017566.1.1798 at position 3:6 Sequence length != multiple of 3 for SC|017566.1.1824! Invalid codon C in SC|017566.1.1824 Sequence length != multiple of 3 for SC|017566.1.1840! Invalid codon G in SC|017566.1.1840 Sequence length != multiple of 3 for SC|017573.1.33! Invalid codon AG in SC|017573.1.33 Sequence length != multiple of 3 for SC|017573.1.140! Invalid codon AG in SC|017573.1.140 Sequence length != multiple of 3 for SC|017573.1.210! In-frame STOP codon in SC|017573.1.210 at position 111:114 Sequence length != multiple of 3 for SC|017573.1.216! Invalid codon A in SC|017573.1.216 Sequence length != multiple of 3 for SC|017573.1.234! Invalid codon TG in SC|017573.1.234 Sequence length != multiple of 3 for SC|017573.1.272! Invalid codon A in SC|017573.1.272 Sequence length != multiple of 3 for SC|017573.1.314! Invalid codon G in SC|017573.1.314 Sequence length != multiple of 3 for SC|017573.1.448! Invalid codon G in SC|017573.1.448 Sequence length != multiple of 3 for SC|017573.1.450! In-frame STOP codon in SC|017573.1.450 at position 0:3 Sequence length != multiple of 3 for SC|017573.1.613! Invalid codon G in SC|017573.1.613 Sequence length != multiple of 3 for SC|017573.1.620! Invalid codon AG in SC|017573.1.620 Sequence length != multiple of 3 for SC|017573.1.662! Invalid codon AG in SC|017573.1.662 Sequence length != multiple of 3 for SC|017573.1.896.2! Invalid codon CT in SC|017573.1.896.2 Sequence length != multiple of 3 for SC|017573.1.985! In-frame STOP codon in SC|017573.1.985 at position 6:9 Sequence length != multiple of 3 for SC|017573.1.1025! In-frame STOP codon in SC|017573.1.1025 at position 36:39 Sequence length != multiple of 3 for SC|017559.1.68! Invalid codon G in SC|017559.1.68 Sequence length != multiple of 3 for SC|017559.1.92! In-frame STOP codon in SC|017559.1.92 at position 6:9 Sequence length != multiple of 3 for SC|017559.1.131! Invalid codon TT in SC|017559.1.131 Sequence length != multiple of 3 for SC|017559.1.274! In-frame STOP codon in SC|017559.1.274 at position 231:234 Sequence length != multiple of 3 for SC|017559.1.442.1! Invalid codon A in SC|017559.1.442.1 Sequence length != multiple of 3 for SC|017559.1.459! Invalid codon GA in SC|017559.1.459 Sequence length != multiple of 3 for SC|017559.1.538! In-frame STOP codon in SC|017559.1.538 at position 0:3 In-frame STOP codon in SC|017559.1.569 at position 0:3 Sequence length != multiple of 3 for SC|017559.1.604! Invalid codon G in SC|017559.1.604 Sequence length != multiple of 3 for SC|017559.1.871.1! Invalid codon G in SC|017559.1.871.1 Sequence length != multiple of 3 for SC|017559.1.980! In-frame STOP codon in SC|017559.1.980 at position 54:57 Sequence length != multiple of 3 for SC|017559.1.1025! Invalid codon GT in SC|017559.1.1025 Sequence length != multiple of 3 for SC|017559.1.1102! In-frame STOP codon in SC|017559.1.1102 at position 0:3 Sequence length != multiple of 3 for SC|017559.1.1319! In-frame STOP codon in SC|017559.1.1319 at position 0:3 Sequence length != multiple of 3 for SC|017559.1.1349.2! Invalid codon GT in SC|017559.1.1349.2 Sequence length != multiple of 3 for SC|017559.1.1374! In-frame STOP codon in SC|017559.1.1374 at position 225:228 Sequence length != multiple of 3 for SC|017559.1.1380! Invalid codon AG in SC|017559.1.1380 Sequence length != multiple of 3 for SC|017559.1.1427.1! Invalid codon TT in SC|017559.1.1427.1 Sequence length != multiple of 3 for SC|017559.1.1615! Invalid codon A in SC|017559.1.1615 Sequence length != multiple of 3 for SC|017559.1.1789! In-frame STOP codon in SC|017559.1.1789 at position 6:9 Sequence length != multiple of 3 for SC|017559.1.1804! In-frame STOP codon in SC|017559.1.1804 at position 120:123 Sequence length != multiple of 3 for SC|017559.1.1915! Invalid codon AA in SC|017559.1.1915 Sequence length != multiple of 3 for SC|017559.1.1961! In-frame STOP codon in SC|017559.1.1961 at position 1125:1128 Sequence length != multiple of 3 for SC|017559.1.2122! Invalid codon GA in SC|017559.1.2122 Sequence length != multiple of 3 for SC|017559.1.2167! Invalid codon G in SC|017559.1.2167 Sequence length != multiple of 3 for SC|017557.1.39! In-frame STOP codon in SC|017557.1.39 at position 69:72 Sequence length != multiple of 3 for SC|017557.1.190! Invalid codon G in SC|017557.1.190 Sequence length != multiple of 3 for SC|017557.1.330! In-frame STOP codon in SC|017557.1.330 at position 69:72 Sequence length != multiple of 3 for SC|017557.1.333! Invalid codon G in SC|017557.1.333 Sequence length != multiple of 3 for SC|017557.1.334! In-frame STOP codon in SC|017557.1.334 at position 12:15 Sequence length != multiple of 3 for SC|017557.1.347! Invalid codon AG in SC|017557.1.347 Sequence length != multiple of 3 for SC|017557.1.393! In-frame STOP codon in SC|017557.1.393 at position 108:111 Sequence length != multiple of 3 for SC|017557.1.430! In-frame STOP codon in SC|017557.1.430 at position 24:27 Sequence length != multiple of 3 for SC|017557.1.485! In-frame STOP codon in SC|017557.1.485 at position 78:81 Sequence length != multiple of 3 for SC|017557.1.525! In-frame STOP codon in SC|017557.1.525 at position 33:36 Sequence length != multiple of 3 for SC|017557.1.570! Invalid codon G in SC|017557.1.570 Sequence length != multiple of 3 for SC|017557.1.620! Invalid codon AG in SC|017557.1.620 Sequence length != multiple of 3 for SC|017557.1.630! In-frame STOP codon in SC|017557.1.630 at position 15:18 Sequence length != multiple of 3 for SC|017557.1.718! Invalid codon GA in SC|017557.1.718 Sequence length != multiple of 3 for SC|017557.1.849! Invalid codon CG in SC|017557.1.849 Sequence length != multiple of 3 for SC|017557.1.850! Invalid codon TT in SC|017557.1.850 Sequence length != multiple of 3 for SC|017557.1.977! Invalid codon T in SC|017557.1.977 Sequence length != multiple of 3 for SC|017557.1.1228! In-frame STOP codon in SC|017557.1.1228 at position 18:21 Sequence length != multiple of 3 for SC|017557.1.1258! Invalid codon GA in SC|017557.1.1258 Sequence length != multiple of 3 for SC|017557.1.1260! In-frame STOP codon in SC|017557.1.1260 at position 6:9 Sequence length != multiple of 3 for SC|017557.1.1340! In-frame STOP codon in SC|017557.1.1340 at position 27:30 Sequence length != multiple of 3 for SC|017557.1.1379! Invalid codon AA in SC|017557.1.1379 Sequence length != multiple of 3 for SC|017557.1.1389! Invalid codon G in SC|017557.1.1389 Sequence length != multiple of 3 for SC|017557.1.1478! Invalid codon AA in SC|017557.1.1478 Sequence length != multiple of 3 for SC|017557.1.1505! Invalid codon TT in SC|017557.1.1505 Sequence length != multiple of 3 for SC|017557.1.1537! Invalid codon TG in SC|017557.1.1537 Sequence length != multiple of 3 for SC|017557.1.1615! Invalid codon G in SC|017557.1.1615 Sequence length != multiple of 3 for SC|017557.1.1734! In-frame STOP codon in SC|017557.1.1734 at position 27:30 Sequence length != multiple of 3 for SC|017557.1.1799! In-frame STOP codon in SC|017557.1.1799 at position 0:3 Sequence length != multiple of 3 for SC|017557.1.1860! In-frame STOP codon in SC|017557.1.1860 at position 27:30 Sequence length != multiple of 3 for SC|017557.1.2077! In-frame STOP codon in SC|017557.1.2077 at position 42:45 Sequence length != multiple of 3 for SC|017557.1.2136! Invalid codon G in SC|017557.1.2136 Sequence length != multiple of 3 for SC|017557.1.2150! Invalid codon G in SC|017557.1.2150 Sequence length != multiple of 3 for SC|017557.1.2255! Invalid codon AG in SC|017557.1.2255 Sequence length != multiple of 3 for SC|017557.1.2497! Invalid codon AG in SC|017557.1.2497 Sequence length != multiple of 3 for SC|017557.1.2544! Invalid codon G in SC|017557.1.2544 Sequence length != multiple of 3 for SC|017557.1.2729! Invalid codon G in SC|017557.1.2729 Sequence length != multiple of 3 for SC|017557.1.2789! In-frame STOP codon in SC|017557.1.2789 at position 57:60 Sequence length != multiple of 3 for SC|017557.1.2790! In-frame STOP codon in SC|017557.1.2790 at position 21:24 Sequence length != multiple of 3 for SC|017557.1.2880! Invalid codon C in SC|017557.1.2880 Sequence length != multiple of 3 for SC|017557.1.2931! Invalid codon T in SC|017557.1.2931 Sequence length != multiple of 3 for SC|017557.1.2951.1! Invalid codon CT in SC|017557.1.2951.1 Sequence length != multiple of 3 for SC|017555.1.148! Invalid codon AG in SC|017555.1.148 Sequence length != multiple of 3 for SC|017555.1.169! Invalid codon CA in SC|017555.1.169 Sequence length != multiple of 3 for SC|017555.1.243! In-frame STOP codon in SC|017555.1.243 at position 108:111 Sequence length != multiple of 3 for SC|017555.1.326! In-frame STOP codon in SC|017555.1.326 at position 0:3 Sequence length != multiple of 3 for SC|017555.1.370! In-frame STOP codon in SC|017555.1.370 at position 18:21 Sequence length != multiple of 3 for SC|017555.1.505! Invalid codon AA in SC|017555.1.505 Sequence length != multiple of 3 for SC|017555.1.605! Invalid codon T in SC|017555.1.605 Sequence length != multiple of 3 for SC|017555.1.613! Invalid codon CT in SC|017555.1.613 Sequence length != multiple of 3 for SC|017555.1.704! In-frame STOP codon in SC|017555.1.704 at position 0:3 Sequence length != multiple of 3 for SC|017555.1.787! Invalid codon CA in SC|017555.1.787 Sequence length != multiple of 3 for SC|017555.1.993! Invalid codon G in SC|017555.1.993 Sequence length != multiple of 3 for SC|017555.1.996! In-frame STOP codon in SC|017555.1.996 at position 6:9 Sequence length != multiple of 3 for SC|017555.1.1013! Invalid codon AA in SC|017555.1.1013 Sequence length != multiple of 3 for SC|017555.1.1039! Invalid codon AG in SC|017555.1.1039 Sequence length != multiple of 3 for SC|017555.1.1172! In-frame STOP codon in SC|017555.1.1172 at position 156:159 Sequence length != multiple of 3 for SC|017555.1.1185! In-frame STOP codon in SC|017555.1.1185 at position 0:3 Sequence length != multiple of 3 for SC|017555.1.1220! Invalid codon G in SC|017555.1.1220 Sequence length != multiple of 3 for SC|017555.1.1296! In-frame STOP codon in SC|017555.1.1296 at position 72:75 Sequence length != multiple of 3 for SC|017555.1.1525! Invalid codon AG in SC|017555.1.1525 Sequence length != multiple of 3 for SC|017555.1.1577! Invalid codon G in SC|017555.1.1577 Sequence length != multiple of 3 for SC|017555.1.1595! Invalid codon C in SC|017555.1.1595 Sequence length != multiple of 3 for SC|017555.1.1606! In-frame STOP codon in SC|017555.1.1606 at position 3:6 Sequence length != multiple of 3 for SC|017555.1.1609! In-frame STOP codon in SC|017555.1.1609 at position 39:42 Sequence length != multiple of 3 for SC|017555.1.1610! In-frame STOP codon in SC|017555.1.1610 at position 42:45 Sequence length != multiple of 3 for SC|017555.1.1875! In-frame STOP codon in SC|017555.1.1875 at position 3:6 Sequence length != multiple of 3 for SC|017555.1.1897! In-frame STOP codon in SC|017555.1.1897 at position 12:15 Sequence length != multiple of 3 for SC|017555.1.1918.7! Invalid codon TA in SC|017555.1.1918.7 Sequence length != multiple of 3 for SC|017555.1.1990! In-frame STOP codon in SC|017555.1.1990 at position 0:3 Sequence length != multiple of 3 for SC|017555.1.2024! In-frame STOP codon in SC|017555.1.2024 at position 27:30 Sequence length != multiple of 3 for SC|017555.1.2025! In-frame STOP codon in SC|017555.1.2025 at position 102:105 Sequence length != multiple of 3 for SC|017555.1.2117! Invalid codon AG in SC|017555.1.2117 Sequence length != multiple of 3 for SC|017555.1.2151! In-frame STOP codon in SC|017555.1.2151 at position 69:72 Sequence length != multiple of 3 for SC|017555.1.2187! Invalid codon G in SC|017555.1.2187 Sequence length != multiple of 3 for SC|017555.1.2287! Invalid codon G in SC|017555.1.2287 Sequence length != multiple of 3 for SC|017555.1.2488! Invalid codon G in SC|017555.1.2488 Sequence length != multiple of 3 for SC|017555.1.2598! Invalid codon G in SC|017555.1.2598 Sequence length != multiple of 3 for SC|017555.1.2663.1! Invalid codon AC in SC|017555.1.2663.1 Sequence length != multiple of 3 for SC|017555.1.2706! In-frame STOP codon in SC|017555.1.2706 at position 15:18 Sequence length != multiple of 3 for SC|017555.1.2728! Invalid codon C in SC|017555.1.2728 Sequence length != multiple of 3 for SC|017555.1.2843! Invalid codon GG in SC|017555.1.2843 Sequence length != multiple of 3 for SC|017555.1.2881! In-frame STOP codon in SC|017555.1.2881 at position 162:165 Sequence length != multiple of 3 for SC|017555.1.2885! Invalid codon T in SC|017555.1.2885 Sequence length != multiple of 3 for SC|017555.1.2908! In-frame STOP codon in SC|017555.1.2908 at position 42:45 Sequence length != multiple of 3 for SC|017555.1.2949! Invalid codon GA in SC|017555.1.2949 Sequence length != multiple of 3 for SC|017555.1.3047! Invalid codon AG in SC|017555.1.3047 Sequence length != multiple of 3 for SC|017555.1.3048! Invalid codon C in SC|017555.1.3048 Sequence length != multiple of 3 for SC|017555.1.3050! Invalid codon T in SC|017555.1.3050 Sequence length != multiple of 3 for SC|017555.1.3141! Invalid codon GT in SC|017555.1.3141 Sequence length != multiple of 3 for SC|017555.1.3222! In-frame STOP codon in SC|017555.1.3222 at position 9:12 Sequence length != multiple of 3 for SC|017555.1.3251! Invalid codon AA in SC|017555.1.3251 Sequence length != multiple of 3 for SC|017555.1.3302! In-frame STOP codon in SC|017555.1.3302 at position 0:3 Sequence length != multiple of 3 for SC|017570.1.12! Invalid codon A in SC|017570.1.12 Sequence length != multiple of 3 for SC|017570.1.154! In-frame STOP codon in SC|017570.1.154 at position 6:9 Sequence length != multiple of 3 for SC|017570.1.280! Invalid codon G in SC|017570.1.280 Sequence length != multiple of 3 for SC|017570.1.352! Invalid codon TG in SC|017570.1.352 Sequence length != multiple of 3 for SC|017570.1.400! Invalid codon AG in SC|017570.1.400 Sequence length != multiple of 3 for SC|017570.1.480! Invalid codon G in SC|017570.1.480 Sequence length != multiple of 3 for SC|017570.1.483! Invalid codon T in SC|017570.1.483 Sequence length != multiple of 3 for SC|017570.1.491! Invalid codon AT in SC|017570.1.491 Sequence length != multiple of 3 for SC|017570.1.512! Invalid codon AT in SC|017570.1.512 Sequence length != multiple of 3 for SC|017570.1.523! In-frame STOP codon in SC|017570.1.523 at position 9:12 Sequence length != multiple of 3 for SC|017570.1.536! Invalid codon A in SC|017570.1.536 Sequence length != multiple of 3 for SC|017570.1.580! Invalid codon CA in SC|017570.1.580 Sequence length != multiple of 3 for SC|017570.1.586! Invalid codon C in SC|017570.1.586 Sequence length != multiple of 3 for SC|017570.1.587! In-frame STOP codon in SC|017570.1.587 at position 24:27 Sequence length != multiple of 3 for SC|017570.1.591! In-frame STOP codon in SC|017570.1.591 at position 51:54 Sequence length != multiple of 3 for SC|017570.1.596! Invalid codon A in SC|017570.1.596 Sequence length != multiple of 3 for SC|017570.1.707! In-frame STOP codon in SC|017570.1.707 at position 42:45 Sequence length != multiple of 3 for SC|017570.1.715! Invalid codon G in SC|017570.1.715 Sequence length != multiple of 3 for SC|017570.1.720! In-frame STOP codon in SC|017570.1.720 at position 6:9 Sequence length != multiple of 3 for SC|017570.1.725! In-frame STOP codon in SC|017570.1.725 at position 33:36 Sequence length != multiple of 3 for SC|017570.1.733! Invalid codon AG in SC|017570.1.733 Sequence length != multiple of 3 for SC|017570.1.826! Invalid codon G in SC|017570.1.826 Sequence length != multiple of 3 for SC|017570.1.879! In-frame STOP codon in SC|017570.1.879 at position 21:24 Sequence length != multiple of 3 for SC|017570.1.909! In-frame STOP codon in SC|017570.1.909 at position 24:27 Sequence length != multiple of 3 for SC|017570.1.1039! Invalid codon AG in SC|017570.1.1039 Sequence length != multiple of 3 for SC|017570.1.1051! Invalid codon A in SC|017570.1.1051 Sequence length != multiple of 3 for SC|017570.1.1081! Invalid codon G in SC|017570.1.1081 Sequence length != multiple of 3 for SC|017570.1.1166! Invalid codon GT in SC|017570.1.1166 Sequence length != multiple of 3 for SC|017570.1.1169! In-frame STOP codon in SC|017570.1.1169 at position 21:24 Sequence length != multiple of 3 for SC|017570.1.1186! Invalid codon T in SC|017570.1.1186 Sequence length != multiple of 3 for SC|017570.1.1265! Invalid codon T in SC|017570.1.1265 Sequence length != multiple of 3 for SC|017570.1.1341! Invalid codon A in SC|017570.1.1341 Sequence length != multiple of 3 for SC|017570.1.1441! In-frame STOP codon in SC|017570.1.1441 at position 69:72 Sequence length != multiple of 3 for SC|017570.1.1539! Invalid codon GG in SC|017570.1.1539 Sequence length != multiple of 3 for SC|017570.1.1634! Invalid codon G in SC|017570.1.1634 Sequence length != multiple of 3 for SC|017570.1.1682! In-frame STOP codon in SC|017570.1.1682 at position 66:69 Sequence length != multiple of 3 for SC|017570.1.1692! In-frame STOP codon in SC|017570.1.1692 at position 3:6 Sequence length != multiple of 3 for SC|017570.1.1752! Invalid codon GG in SC|017570.1.1752 Sequence length != multiple of 3 for SC|017570.1.1753! Invalid codon G in SC|017570.1.1753 Sequence length != multiple of 3 for SC|017570.1.1754! In-frame STOP codon in SC|017570.1.1754 at position 150:153 Sequence length != multiple of 3 for SC|017570.1.1810! Invalid codon GA in SC|017570.1.1810

It seems that the error is about the length of the sequence not being a multiple of three. I still get the output file “Sc.ksd”, but the svg result is still blank. And my code, input and output file are following.

singularity exec wgd.sif wgd dmd -e 1e-10 --nostrictcds -o Sc.dmd input.cds.fasta

singularity exec wgd.sif wgd ksd --n_threads 10 -mp 1000 -o Sc.ksd Sc.dmd/Sc.relab.cds.fasta.mcl test.zip

heche-psb commented 3 months ago

Hi, thanks for your interest in wgd v2. It seems that you're still using the wgd v1. May you try with v2 and the suggested parameter setting in the README and see if you can get the proper results?

Alalakikun commented 3 months ago

Hi, Thank you for the advice you provided. I tried to download wgd v2 using conda, but an error occurs when I run it.

Traceback (most recent call last): File "/home/ug1734/.conda/envs/wgd/bin/wgd", line 7, in from cli import cli File "/home/ug1734/.conda/envs/wgd/lib/python3.8/site-packages/cli.py", line 13, in version = pkg_resources.require("wgd")[0].version File "/home/ug1734/.conda/envs/wgd/lib/python3.8/site-packages/pkg_resources/init.py", line 952, in require needed = self.resolve(parse_requirements(requirements)) File "/home/ug1734/.conda/envs/wgd/lib/python3.8/site-packages/pkg_resources/init.py", line 813, in resolve dist = self._resolve_dist( File "/home/ug1734/.conda/envs/wgd/lib/python3.8/site-packages/pkg_resources/init.py", line 859, in _resolve_dist raise VersionConflict(dist, req).with_context(dependent_req) pkg_resources.ContextualVersionConflict: (zipp 3.4.1 (/home/ug1734/.conda/envs/wgd/lib/python3.8/site-packages), Requirement.parse('zipp==3.4.0'), {'wgd'})

On Tue, Mar 12, 2024 at 4:34 AM heche-psb @.***> wrote:

Hi, thanks for your interest in wgd v2. It seems that you're still using the wgd v1. May you try with v2 and the suggested parameter setting in the README and see if you can get the proper results?

— Reply to this email directly, view it on GitHub https://github.com/heche-psb/wgd/issues/24#issuecomment-1989393455, or unsubscribe https://github.com/notifications/unsubscribe-auth/A6LFE63YFA5EXTJUEX2QLV3YXYINDAVCNFSM6AAAAABEQMJN72VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSOBZGM4TGNBVGU . You are receiving this because you authored the thread.Message ID: @.***>

heche-psb commented 3 months ago

Hi, I'm not sure how you implemented bioconda. Normally it should be no problem. You may try bioconda, PYPI or direct installation from this repository.