Plot that combines paired comparisons and focal species plot

[hakwlla]

Hello! Thanks for this awesome tool. I was able to create all the plots, but wanted some help creating a big plot which essentially combines the two plots below:

All_pairs.ks.node.weighted.pdf Mixed.ks.ivera_cds.fa.node.weighted.pdf

I saw a similar plot on the WGD Git page, but wanted some more guidance on how to go about making something like the plot below:

Here is my code for more context: wgd dmd gmax_cds.fa ivera_cds.fa lupinalbus_cds.fa senna_cds.fa -f ivera_cds.fa -o wgd_dmd_all wgd ksd wgd_dmd_all/merge_focus.tsv gmax_cds.fa ivera_cds.fa lupinalbus_cds.fa senna_cds.fa -o wgd_ksd_all wgd viz -d wgd_ksd_all/merge_focus.tsv.ks.tsv --focus2all ivera_cds.fa --extraparanomeks inga_ksd/ivera_cds.fa.tsv.ks.tsv -sp speciestree.txt --anchorpoints wgd_syn/iadhore-out/anchorpoints.txt --plotapgmm --plotelmm -o wgd_viz_all