hed-standard / hed-schemas

Repository for HED schemas. The SCORE library for clinical annotations is now available.
https://hed-schemas.readthedocs.io/en/latest/
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Add exemplar tags #256

Closed neuromechanist closed 1 month ago

neuromechanist commented 1 month ago

I have added a couple of tags with references in the Annotation column. I think there are some outstanding points:

  1. Should the database names also defined in the prefixes (I assume not, because the names are already available in OBO)
  2. Should we use has_dbxref or db_xref for cross-referencing (or any other label)? has_dbxref is defined here and db_xref is defined here.
  3. What should I do for the abbreviations, like LHJ and RHJ? Many of them are quite well-known and handy to use
neuromechanist commented 1 month ago

Thanks Kay,

I corrected the Annotations and added obo to the prefix table.

neuromechanist commented 1 month ago

There are some circular or incorrect references and other syntax errors:

  • Head-landmark lists its parent as Anatomical-landmarks. It should be Anatomical-landmark
  • Torso-chest-landmark also lists Anatomical-landmarks as it parent.
  • HED tag names cannot have blanks or parentheses. By convention only first letter is capitalized.

    • Left-helix-tragus-junction
    • Right-helix-tragus-junction
    • Vertebra-promines

The stuff in parentheses should probably go in the description.

Addressed!