I feel ips is a good generalist R package, allowing to work with many phylogenetic tools. For example, the ips::rbeauti function creates a general BEAUti XML file, to be used by BEAST2.
I suggest to add a link in the ips::rbeauti documentation to a specialized R package suite [1] to work with BEAST2 called babette [2] (disclaimer: I wrote that package suite), so that people that want to do something more specialized than ips::rbeauti can better find this package.
If you agree, I volunteer to create a Pull Request with this suggestion, but if you prefer to do it yourself, would also be fine.
Do you agree this is a good idea?
Cheers, Richel Bilderbeek
[1] I use the word 'suite' as babette consists out of five packages
[2] Bilderbeek, Richèl JC, and Rampal S. Etienne. "babette: BEAUti 2, BEAST 2 and Tracer for R." Methods in Ecology and Evolution (2018). https://doi.org/10.1111/2041-210X.13032
Dear dr Heibl,
I feel ips is a good generalist R package, allowing to work with many phylogenetic tools. For example, the
ips::rbeautifunction creates a general BEAUti XML file, to be used by BEAST2.I suggest to add a link in the
ips::rbeautidocumentation to a specialized R package suite [1] to work with BEAST2 called babette [2] (disclaimer: I wrote that package suite), so that people that want to do something more specialized thanips::rbeautican better find this package.If you agree, I volunteer to create a Pull Request with this suggestion, but if you prefer to do it yourself, would also be fine.
Do you agree this is a good idea?
Cheers, Richel Bilderbeek
babetteconsists out of five packages