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heibl / ips

R Interfaces to Phylogenetic Software
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read.beast.table removed? #8

Closed fhafarache closed 3 years ago

fhafarache commented 4 years ago

Hello,

In R 4.0.2 (om MacOSX) I tried:

install.packages("ips") library(ips) ?read.beast() ?read.beast.table()

Were these functions removed from ips?

Thanks

Fernando

heibl commented 4 years ago

Hi Fernando,

no, they were not removed, but the are currently not exported to the package's namespace, because they are somewhat outdated. You can still call them with ips:::read.beast and ips:::read.beast.table. Or you might like to the treeio package, which has a lot of up-to-date functionality for BEAST trees. If you insist to have them in the namespace you have to be patient because I will be in hospital for at least the next three weeks.

Best, Christoph

fhafarache commented 4 years ago

Hello Christoph,

Many thanks for the prompt reply. I will check treeio. I have tried ips:::read.beast.table and works fine.

Hope you are doing well, and wishing you a quick recovery.

Best wishes,

Fernando

On 18Jul, 2020, at 04:25, Christoph Heibl notifications@github.com wrote:

Hi Fernando,

no, they were not removed, but the are currently not exported to the package's namespace, because they are somewhat outdated. You can still call them with ips:::read.beast and ips:::read.beast.table. Or you might like to the treeio package, which has a lot of up-to-date functionality for BEAST trees. If you insist to have them in the namespace you have to be patient because I will be in hospital for at least the next three weeks.

Best, Christoph

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/heibl/ips/issues/8#issuecomment-660442717, or unsubscribe https://github.com/notifications/unsubscribe-auth/AE2LNKT4TZLUJP52CSCMBMTR4FE57ANCNFSM4O63EBXQ.

heibl commented 3 years ago

read.beast and read.beast.table are now exported to the package namespace again.

fhafarache commented 3 years ago

This is great! many thanks!

On 9 Apr 2021, at 16:10, Christoph Heibl @.***> wrote:

read.beast and read.beast.table are now exported to the package namespace again.

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