heiniglab / scPower-Cell-Atlas

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Size factor estimation failed! Try poscounts #7

Open Cem-Gulec opened 1 year ago

Cem-Gulec commented 1 year ago

Describe the bug Even though there is "poscounts" for the parameter of "sizeFactors", I get this error

To Reproduce heart: (index= 4)

How it looks like Error in nbinom.estimation(counts.subsampled.converted): Size factor estimation failed! Probably due to sparsity of the matrix! Try poscounts instead as variable sizeFactors