heiniglab / scPower

Experimental design framework for scRNAseq population studies (eQTL and DE)
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[Error, Warning] Parametric dispersion fit failed #16

Closed Cem-Gulec closed 1 year ago

Cem-Gulec commented 1 year ago

error

gtex:

Assay: 10x 3' v2 (EFO:0009899), Tissue: skin of leg (UBERON:0001511), Cell Type: endothelial cell of lymphatic vessel (CL:0002138) Assay: 10x 3' v2 (EFO:0009899), Tissue: skin of leg (UBERON:0001511), Cell Type: professional antigen presenting cell (CL:0000145) Assay: 10x 3' v2 (EFO:0009899), Tissue: skin of leg (UBERON:0001511), Cell Type: T cell (CL:0000084)

immune - Global dataset:

Assay: 10x 5' v1 (EFO:0011025), Tissue: mesenteric lymph node (UBERON:0002509), Cell Type: macrophage (CL:0000235) Assay: 10x 5' v1 (EFO:0011025), Tissue: mesenteric lymph node (UBERON:0002509), Cell Type: alpha-beta T cell (CL:0000789) Assay: 10x 5' v1 (EFO:0011025), Tissue: spleen (UBERON:0002106), Cell Type: alpha-beta T cell (CL:0000789)

pancreas - Human pancreatic islet cells:

Assay: 10x 3' v2 (EFO:0009899), Tissue: islet of Langerhans (UBERON:0000006), Cell Type: pancreatic PP cell (CL:0002275)

covid:

Assay: 10x 5' v1 (EFO:0011025), Tissue: blood (UBERON:0000178), Cell Type: CD4-positive, alpha-beta memory T cell (CL:0000897) Assay: 10x 5' v1 (EFO:0011025), Tissue: blood (UBERON:0000178), Cell Type: immature B cell (CL:0000816) Assay: 10x 5' v1 (EFO:0011025), Tissue: blood (UBERON:0000178), Cell Type: neutrophil (CL:0000775)

skeletal muscle - All Cells:

Assay: 10x 3' v3 (EFO:0009922), Tissue: eye (UBERON:0000970), Cell Type: melanocyte (CL:0000148) Assay: 10x 3' v3 (EFO:0009922), Tissue: cardiac atrium (UBERON:0002081), Cell Type: smooth muscle cell (CL:0000192) Assay: 10x 3' v3 (EFO:0009922), Tissue: cardiac ventricle (UBERON:0002082), Cell Type: smooth muscle cell (CL:0000192)