helendallas / FRC_FBIS

Freshwater research Centre FBIS Data Consolidation Management
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Algal data - Phungula 2018 #270

Closed aneriswanepoel closed 11 months ago

aneriswanepoel commented 2 years ago

Literature search for algal data in KNP area

aneriswanepoel commented 2 years ago

Some algal taxa missing; added to spreadsheet.

helendallas commented 1 year ago

Data extracted from FBIS, have PDF, but cannot find upload file

helendallas commented 1 year ago

@Janette-Lumley Please check if Aneri has added all the data correctly, including photographs if available

https://freshwaterbiodiversity.org/map/#site-detail/taxon=&search=&siteId=&collector=&category=&yearFrom=&yearTo=&months=&boundary=&userBoundary=&referenceCategory=&spatialFilter=&reference=[%221190%22]&endemic=&conservationStatus=[]&modules=22&validated=&sourceCollection=[%22fbis%22,%22gbif%22,%22virtual_museum%22]&module=occurrence&ecologicalCategory=&rank=&siteIdOpen=&orderBy=name&polygon=&dst=

Janette-Lumley commented 1 year ago

@helendallas the data has been added correctly and the sites have photos. Two site codes have been duplicated but with different data: A6NYLR-00003 - 2 sites with the same name and different data A6NYLR-00002 - 3 sites with the same name and different data Do we need to merge them?

helendallas commented 11 months ago

The first site A6NYLR-00003 - there are only occurrences at one site - second one has zero occurrences.

Screenshot 2023-09-19 at 14 53 16

Second site: A6NYLR-00002

Only first site has occurrence data. Can you check the descriptions of 1 and 3.

Screenshot 2023-09-19 at 14 56 51

I think Azeri must of created more than one site ?????

Once you confirm you agree, I will delete the sites with no occurrence records. Thanks

helendallas commented 11 months ago

its very strange to have duplicate sites....must be a bug????

Janette-Lumley commented 11 months ago

@helendallas this is very strange, when I go into those sites I get different results with occurences in all sites:

image image

helendallas commented 11 months ago

@Janette-Lumley Please can you check these again on testing. Here is the link. Dimas said it has been fixed

https://freshwaterbiodiversity.org/map/#search//taxon=&search=&siteId=&collector=&category=&yearFrom=&yearTo=&months=&boundary=&userBoundary=&referenceCategory=&spatialFilter=&reference=[%221190%22]&endemic=&conservationStatus=[]&modules=&validated=&sourceCollection=[%22fbis%22,%22gbif%22,%22virtual_museum%22]&module=occurrence&ecologicalCategory=&rank=&siteIdOpen=&orderBy=name&polygon=&dst=&ecosystemType=

helendallas commented 11 months ago

sorry above link was wrong. try this one please

https://testing.healthyrivers.kartoza.com/map/#search//taxon=&search=&siteId=&collector=&category=&yearFrom=&yearTo=&months=&boundary=&userBoundary=&referenceCategory=&spatialFilter=&reference=[%221190%22]&endemic=&conservationStatus=[]&modules=&validated=&sourceCollection=[%22fbis%22,%22gbif%22,%22virtual_museum%22]&module=occurrence&ecologicalCategory=&rank=&siteIdOpen=&orderBy=name&polygon=&dst=&ecosystemType=River,Wetland,Open%20waterbody,Unspecified

Janette-Lumley commented 11 months ago

@helendallas yes there is only one of each sites now on the testing. Not sure if some data relating to those sites has been removed though because for example in site A6NYLR-00002 originally one of them had 18 occurances of algae data and on the second site 26 occurances of invert data. Now on the testing there is just 26 occurances of invert data and no algae so it doesnt come up with that source reference anymore, if you remove the source reference you will see the site with invert data linked.

helendallas commented 11 months ago

But the Phungule study only had algal data right. Can you check against the actual data, thanks

The invert data was for a different study so now has its own code as they are slightly different coordinates

Janette-Lumley commented 11 months ago

@helendallas yes so basically the algae data for A6NYLR-00002 has suddenly dissapeared completely whereas before there were 18 occurances of algae data.

helendallas commented 11 months ago

Ok, but did you check this again the pdf

helendallas commented 11 months ago

or rather against the xls. Forget about the site code. It may have change to something else. You need to check that all the data are in from this spreadsheet, regardless of the site code. Phungula 2018.xlsx

Janette-Lumley commented 11 months ago

Oh ok so the code changed to A6NYLR-00180. I don't think the excel spreadsheet is the correct one but I have checked the data now on testing against the live site as well as the pdf and all looks good.

helendallas commented 11 months ago

Brilliant thanks. As long as the data are all still there :) and no sites are missing, then I can close the ticket

Janette-Lumley commented 11 months ago

:) Yes it is all still there so you can close the ticket. Thanks.