Closed helendallas closed 1 month ago
Thanks! Will follow up this weekend
On Fri, 24 Nov 2023, 14:47 Helen Dallas, @.***> wrote:
Assigned #295 https://github.com/helendallas/FRC_FBIS/issues/295 to @NancyFreshwater https://github.com/NancyFreshwater.
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Comments via email. Added here for the record.
NJ: Re loading the data on to fbis, starting with the 10 000 entries, do you have a sense of how long this will take? Hlengiwe can no longer do this task, so it either falls to me, or we can look to the two invoices to reallocate from last years one to your team if someone can do this.
HD: Can I suggest we get someone to help from FRC – and look at reallocated last years SANBI funds. Here are the issues again I identified that need to be resolved before we can upload the data.
@KSnaddon has agreed to take this on. The relevant file is attached above. As mentioned, Points 1 to 4 need attending to, I have done the remainder. @NancyFreshwater Please can you confirm that this is the most recent version of the dataset.
@NancyFreshwater I have a few more queries please:
@helendallas Updated plant occurrence list has been sent to you by Nancy. Nancy is still adding common plants to ML Excel spreadsheet, using information solicited from plant community.
@NancyFreshwater will speak to Helen / Kate about how / when to update ML on FBIS.
@KSnaddon @NancyFreshwater
I spent today working o this and am currently uploading to testing. Sampling dates were a problem and needed to be revised.
Please don't edit this dataset now. You can begin a new dataset with new data received.
Thanks
@NancyFreshwater I have edited and uploaded the plant dataset - some issues below, which I have taken the liberty of fixing so that we can have the data in the FBIS. 269 records did not upload.
Two occurrence records had a date of 1982/02/31 - this is incorrect since there are only 28 days in Feb. I have changed to 1982/02/28
Several taxa did not exist on the master list for various reason
Adenostemma caffrum - the GBIF link was for the Adenostemma caffrum subsp. caffrum DC. instead of the Adenostemma caffrum DC. I have updated GBIF link in master file and in taxon management - done
Aeschynomene uniflora - Updated occurrence data to to Aeschynomene uniflora uniflora - variety not species - Aeschynomene uniflora uniflora is a synonym of Aeschynomene uniflora. Both included.
Amauropelta bergiana bergiana - the GBIF link was for Amauropelta bergiana (Schltdl.) Holttum - updated GBIF link in master list and in taxon managemen to Amauropelta bergiana var. bergiana (Schltdl.) Holttum, 1974 - Done
Askidiosperma albo-aristatum corrected to Askidiosperma alboaristatum in occurrence data - Done
Atriplex vestita appendiculata changed to variety in occurrence data - Done
Atriplex vestita inappendiculata changed to variety in occurrence data - Done
Blechnum capense. -unknown issue, I will try again - Done
Calamagrostis epigejos capensis changed to variety in occurrence data - Done, only in sites with no sampling dates
Didymochlaena truncatula. -unknown issue, I will try again - Done
Fimbristylis dichotoma dichotoma - was species in Taxon management, changed to subspecies - Done
Ixianthes retzioides - incorrect GBIF link on master list - update - Done
Kniphofia ichopensis ichopensis - changed to variety in occurrence data - Done
Nymphaea nouchali caerulea- changed to variety in occurrence data - Done
Ophioglossum lancifolium. -missing from master list - added - Done
Panicum coloratum coloratum - GBIF link was Panicum coloratum - updated GBIF link in master list and in taxon management. changed to variety in occurrence data - Done
Pycreus polystachyos polystachyos - GBIF link was Pycreus polystachyos - updated GBIF link in master list and in taxon management. -Chnaged to Variety - Done
I have updated these on FBIS Production - and now I need production to sync to testing. Then I will check on Monday if these uploaded correctly.
I recommend that we delete these records for now. If you can find a date later then they can be added as a new dataset
@NancyFreshwater @KSnaddon I have managed to upload the plant data onto FBIS production. 9339 occurrence records
Here is the link:
The final corrected upload file is on dropbox in the wetlands folder - Module - Plants - Data Sets and here.
Wetland_Plant_data_Uploaded_2024_03_04 Excluding No Dates.xslx
The remaining records with no dates have been excluded.
SANBI Brahms Database_No Sampling Dates.xlsx
Wetland_Plant_data_Uploaded_2024_03_04 Excluding No Dates.xlsx
Completed, so closing ticket
The Plant data set is here.
Wetland_Plant_data_2023_11_08_nj_Edited HD.xlsx
There a re still several issues that need fixing before it can be uploaded to FBIS.
Including
@NancyFreshwater Please can you fix and send back soonest