helenginn / cppxfel

cppxfel source - I finished my doctorate. This program is FOSSILISED! Assume no more support!!
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Do not calculate CC grid when TRUST_INDEXING_SOLUTION is ON #35

Closed biochem-fan closed 8 years ago

biochem-fan commented 8 years ago

This saves lots of memory.

helenginn commented 8 years ago

Please let me know if I have fixed this and close the issue if so.

biochem-fan commented 8 years ago

It still calculates CC.

biochem-fan commented 8 years ago

Moreover, it crashes after CC grid calculation.

94% complete
96% complete
98% complete
100% complete
Generating CC grid for 10578 images
Total calculations to do: 55952331

Percentage of CCs above 0: 96.4551%
Percentage of inverse CCs above 0: 0%
Histogram:
 Min CC-0.95    1910728
 Min CC0        26988346
 Min CC0.05     303310
 Min CC0.1      481712
 Min CC0.15     638823
 Min CC0.2      769859
 Min CC0.25     881444
 Min CC0.3      970036
 Min CC0.35     1046784
 Min CC0.4      1109948
 Min CC0.45     1165842
 Min CC0.5      1218279
 Min CC0.55     1270206
 Min CC0.6      1325399
 Min CC0.65     1388356
 Min CC0.7      1467177
 Min CC0.75     1574423
 Min CC0.8      1721721
 Min CC0.85     1969897
 Min CC0.9      2457340
 Min CC0.95     5139666
TRUST_INDEXING_SOLUTION is set to ON so ambiguity breaking is skipped.
Error: signal 11:
dials-upstream/build/lib/cppxfel_ext.so(_Z7handleri+0x18)[0x2b67775c8f88]
/lib64/libc.so.6[0x38ff030030]
dials-upstream/build/lib/cppxfel_ext.so(_ZN16AmbiguityBreaker12printResultsEv+0xbc)[0x2b67774c382c]
dials-upstream/build/lib/cppxfel_ext.so(_ZN16AmbiguityBreaker3runEv+0x17)[0x2b67774c5347]
dials-upstream/build/lib/cppxfel_ext.so(_ZN10MtzRefiner12initialMergeEv+0x126)[0x2b6777585a46]
dials-upstream/build/lib/cppxfel_ext.so(_ZN10MtzRefiner6refineEv+0x428)[0x2b677758f388]
dials-upstream/build/lib/cppxfel_ext.so(_ZN15InputFileParser5parseEb+0x61f)[0x2b67775575ef]
dials-upstream/build/lib/cppxfel_ext.so(_Z8new_mainiPPc+0x604)[0x2b67775ca284]
dials-upstream/build/lib/cppxfel_ext.so(_Z18runCommandLineArgsiSt6vectorISsSaISsEE+0x12d)[0x2b67775a426d]
dials-upstream/build/lib/cppxfel_ext.so(_Z14runCommandLineSs+0xc3)[0x2b67775a4393]