Bugfixes, Run Notebooks again and variable name changes

helicalAI / helical

This repository contains the python package for Helical

https://www.helical-ai.com/

GNU Affero General Public License v3.0

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Closed bputzeys closed 3 months ago

bputzeys commented 3 months ago

Fix bug where one could not set the gene_column_name to make a prediction with the Classifier class
Fix notebooks
Fix Geneformer dataset creation where a custom dictionary key can be passed so that the resulting Dataset (after process_data) has the specified key
Rename variable gene_column_name to gene_names