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hellbelly / BS-Snper

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not finding samtools error #14

Open shawpa opened 3 years ago

shawpa commented 3 years ago

I am receiving the following error. The issue appears to be that samtools isn't in my BS-Snper directory. It is installed on its own.

Can't exec "/shared/bin/BS-Snper/samtools-0.1.19/samtools": Permission denied at /shared/bin/BS-Snper/BS-Snper.pl line 129. Permission denied at /shared/bin/BS-Snper/BS-Snper.pl line 129.

Is there a way to provide a "path to samtools" or maybe modify line 129 in the script to look for samtools in another location?

Annie

galaxy001 commented 3 years ago

You can run chmod +x /shared/bin/BS-Snper/samtools-0.1.19/samtools to fix this.