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hellbelly / BS-Snper

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empty output file #4

Open alexyfyf opened 4 years ago

alexyfyf commented 4 years ago

Hi team,

I tried BS-Snper on my RRBS data. The methylation calling and intermediate files were generated, but the final output is empty, however. I followed exactly your example code, and the bam file is from bismark. Could you help how to debug this? Thank you!

laurahspencer commented 2 years ago

We have the exact same issue! @alexyfyf did you identify a cause of your empty output files? Better yet, a solution?

alexyfyf commented 2 years ago

We have the exact same issue! @alexyfyf did you identify a cause of your empty output files? Better yet, a solution?

Sorry I gave up and have got a way to make it work.

DCGreen-Mitra commented 2 years ago

@alexyfyf We are having the same issue. How did you manage to solve this in the end?

alexyfyf commented 2 years ago

@alexyfyf We are having the same issue. How did you manage to solve this in the end?

Sorry, I gave up and have not got a way to make it work.