Errors in final steps of analysis

[mbassalbioinformatics]

Hi, using the latest version of msuite 2.2, there are errors that occur at the end of the analysis which prevent it from generating the report and finishing up correctly.

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/home/mbassal/tools/Msuite2/bin/merge.size.pl w per.chr/chr*.size
Use of uninitialized value in foreach loop entry at /home/mbassal/tools/Msuite2/bin/merge.size.pl line 65.
Use of uninitialized value in foreach loop entry at /home/mbassal/tools/Msuite2/bin/merge.size.pl line 65.
/home/mbassal/tools/Msuite2/bin/merge.size.pl c per.chr/rhr*.size
Use of uninitialized value in foreach loop entry at /home/mbassal/tools/Msuite2/bin/merge.size.pl line 65.
Use of uninitialized value in foreach loop entry at /home/mbassal/tools/Msuite2/bin/merge.size.pl line 65.
R --slave --args Msuite2.size Msuite2.w.size Msuite2.c.size 0 < /home/mbassal/tools/Msuite2/bin/plot.size.R
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R --slave --args Msuite2.lambda.size Msuite2.w.lambda.size Msuite2.c.lambda.size 0 < /home/mbassal/tools/Msuite2/bin/plot.size.R
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R --slave --args Msuite2.pUC19.size Msuite2.w.pUC19.size Msuite2.c.pUC19.size 0 < /home/mbassal/tools/Msuite2/bin/plot.size.R
Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec,  : 
  line 1 did not have 2 elements
Calls: read.table -> scan
Execution halted
make: *** [makefile:50: Msuite2.pUC19.size.pdf] Error 1
Error: it seems that the analysis has not finished yet.

Thoughts?

[hellosunking]

Hi,

Msuite v2.2 added support for pUC19 spike-in, which makes it incompatible with indices built for earlier versions. If you use pUC19 spike-in in your experiments, please rebuild the indices for Msuite2 v2.2, otherwiser you may down-grade to v2.1.

Hope this message solves your issue. Kun