Change GO analysis from Webgestalt to gProfiler

hemberg-lab / SC3

A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments

http://bioconductor.org/packages/SC3

GNU General Public License v3.0

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Change GO analysis from Webgestalt to gProfiler #20

Closed wikiselev closed 7 years ago

wikiselev commented 8 years ago

http://biit.cs.ut.ee/gprofiler/

wikiselev commented 7 years ago

Implemented in the newest version 1.1.7.

Please follow the manual here: https://cdn.rawgit.com/hemberg-lab/SC3/master/vignettes/my-vignette.html

To be able to use it at the moment you need to reinstall both scater and SC3 from the GitHub: install.packages("devtools") devtools::install_github("davismcc/scater", build_vignettes = TRUE) devtools::install_github("hemberg-lab/SC3")

These features will become available on Bioconductor after the next release of Bioconductor.