Closed kieranrcampbell closed 7 years ago
Hi Kieran! Thanks for your suggestion, this is exactly what I am working on right now. In the next release you should be able to visualise any column from the pData(sceset) on the SC3 heatmaps.
This is now done. Please reinstall SC3 from GitHub (Bioconductor build might happen only next week). Updated manual is here: https://cdn.rawgit.com/hemberg-lab/SC3/master/vignettes/my-vignette.html
Thanks again for your suggestion!
Cheers, Vlad
Thanks, this is excellent. Kieran
It would be really nice to have an additional argument passed to
sc3_plot_markers
that accepted either an N length vector (for N cells) or a column name ofpData(sceset)
that added column colouring to the resulting heatmap, so you can compare the consistency of the clustering with a known covariate.