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hemberg-lab / SC3

A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
http://bioconductor.org/packages/SC3
GNU General Public License v3.0
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Loading SC3 in R 3.4.1 #42

Closed harrydgnt closed 6 years ago

harrydgnt commented 6 years ago

Hello

I used SC3 previously and I recently update R from 3.3 to 3.4 and I am having problem with loading SC3.

When I try to load SC3 after scater, i get following error:

`> library(scater)

library(SC3) Error: package or namespace load failed for ‘SC3’: object ‘fData<-’ is not exported by 'namespace:scater`

Any idea how to fix this?

Thank you

Harry

wikiselev commented 6 years ago

Hi, thanks for your message! Could you please send me your sessionInfo()? Cheers, Vlad

P.S. From the error it looks like you have a development version of scater installed. In the newest version they have moved from SCESet class to SingleCellExperiment class and I haven't modified SC3 to deal with this yet. If you reinstall your scater from Bioconductor release branch you should be ok. Otherwise, I will update SC3 before the next release of Bioconductor (October 31) and it will work with the new SingleCellExperiment class. Hope this helps.

wikiselev commented 6 years ago

No response in a month, so I am closing it.