Closed ghost closed 5 years ago
Hi, sorry, I missed this completely, hope you have already solved your problem. But I think, what you are doing is not right. Please look at the pdf
documentation, but running a for
loop after this functions is generally not a good idea.
Dear wikiselev,
Could you elaborate a little bit more why running a for
loop is not a good idea? or could you direct me to the part of the manual that explain it?
Thanks!
@alfonsosaera I don't know, it's just my experience. If it works, that's great, if it does not work in a for
loop, but works without it, I would just run it without it then.
Thanks for the quick answer!
Hi,
I have a script which attempts to generate a pdf file that includes the sc3_plot_cluster_stabilty plot and it appears that if the function is used in a loop, the plot is not able to be generated. However, if the function is used outside of the loop, the plot is able to be generated.
I am currently running the function in a script through the commandline using the sample dataset that was provided.
In the code snippet, the num_of_clusters is a user provided value. This returns a pdf with all of the plots except the cluster stability. Perhaps someone has insight on this?
I would be happy to email/provide the script and my commandline arguments if that would help.