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hemberg-lab / SC3

A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
http://bioconductor.org/packages/SC3
GNU General Public License v3.0
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Color changing of heatmap annotation (sc3_plot_consensus & expression, etc..) #54

Closed jy-nam closed 6 years ago

jy-nam commented 6 years ago

Hi!

Can I change the colors of specific pdata in heatmap manually? I want to fix my sample label color.

Thanks! JY

wikiselev commented 6 years ago

@jy-nam sorry for a delayed response. For the heatmaps we are using the pheatmap package with some default values. At the moment, I don't think it is possible to change them.

carogrou commented 5 years ago

Hello, I was just wondering if any changes had been made in regards to this or if it is still not possible to change the colors for pdata annotations in SC3 heatmaps? Thanks

wikiselev commented 5 years ago

Hi, sorry, unfortunately there is no one working on SC3 development at the moment and we are not planning to invest more time in it mainly because it does not scale well with the experiment sizes nowadays. We expect to be used less and less.

carogrou commented 5 years ago

Ok i see. Thank you very much for the information