export plot from SC3 - Githubissues

hemberg-lab / SC3

A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments

http://bioconductor.org/packages/SC3

GNU General Public License v3.0

118 stars 55 forks source link

export plot from SC3 #62

Closed MichaelPeibo closed 6 years ago

MichaelPeibo commented 6 years ago

Hi, SC3 team Nice package to explore! I got this issue:

I am using R in ubuntu by terminal, > sessionInfo() R version 3.4.3 (2017-11-30) Platform: x86_64-pc-linux-gnu (64-bit) Running under: CentOS release 6.7 (Final) so when I export the plot, usually I use this code: pdf('sc3 marker genes.pdf') sc3_plot_markers(SC3.test, k = 23,show_pdata ="sc3_23_clusters") dev.off() I got plot like this, which is uncomplete sc3 marker genes.pdf how should I deal with it?

wikiselev commented 6 years ago

Hi, try to increase the height of the page in the pdf call. See ?pdf for more details.

MichaelPeibo commented 6 years ago

Right! Increasing height works! Thanks!