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hemberg-lab / SC3

A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
http://bioconductor.org/packages/SC3
GNU General Public License v3.0
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Error in checkForRemoteErrors(val) : #72

Closed 15084921898 closed 6 years ago

15084921898 commented 6 years ago

Hi, i am using SC3 by executing the R script in the SC3-master/R folder ,instead of library SC3 package. I am getting errors after running the code as follow: main code _usos <- sc3(usos, ks = 3, biology = FALSE,gene_filter = FALSE)_

When running code {# calculate distances in parallel dists <- foreach::foreach(i = distances) %dorng% { try({ calculate_distance(dataset, i) }) }}

errors as: Error in checkForRemoteErrors(val) : 3 nodes produced errors; first error: Error in calculate_distance(dataset, i) : no function "calculate_distance"

Thank you!

wikiselev commented 6 years ago

Hi, I think you need to install SC3 properly, otherwise I can't really guarantee it's behaviour.

bluesea0 commented 6 years ago

I have met the same problem. Did you have ever solve it?