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hemberg-lab / SC3

A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
http://bioconductor.org/packages/SC3
GNU General Public License v3.0
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Error in checkForRemoteErrors(val) : 3 nodes produced errors; first error: Error in ED2(data) : Not compatible with requested type: [type=S4; target=double]. #74

Closed JesusCorria closed 6 years ago

JesusCorria commented 6 years ago

Hello

I was running SC3 and I got the following error Error in checkForRemoteErrors(val) : 3 nodes produced errors; first error: Error in ED2(data) : Not compatible with requested type: [type=S4; target=double].

How Can I solve it?

Thanks in advance

Jesus

pati-ni commented 6 years ago

Can you check if your gene expression matrix you use is sparse? is.matrix(yourcountassay(sce))

JesusCorria commented 6 years ago

Thanks

I realize that was the problem and I solved it ,

My best wishes

Jesús

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On 24 Jul 2018, at 18:34, pati-ni notifications@github.com wrote:

Can you check if your gene expression matrix you use is sparse? is.matrix(yourcountassay(sce))

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