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hemberg-lab / SC3

A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
http://bioconductor.org/packages/SC3
GNU General Public License v3.0
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Fixed the sparse matrix issue #89

Open zhangguy opened 5 years ago

zhangguy commented 5 years ago

Issue was discussed here:

https://github.com/hemberg-lab/SC3/issues/53

This is a temp fix. The correlation function cor and ED2 also need regular matrix as input, and converting the sparse matrix to regular isn't memory efficient.

wikiselev commented 5 years ago

Thanks, and sorry for a late reply, I will need to test this first and then merge.