search

hemberg-lab / scRNA.seq.course

Analysis of single cell RNA-seq data course
https://www.singlecellcourse.org
GNU General Public License v3.0
670 stars 360 forks source link

Missing files. The latest added part "Processing RAW scRNA-seq data" has no raw data in git. #139

Closed liusyscholar closed 6 years ago

liusyscholar commented 6 years ago

Hello, dear professors, thanks for your great course! Recently, you seem to update the course and add the important part, processing the raw data. However, there is no share data folder in this git repository. I want to follow your course task and I need those files. It's more convenient for us who studying this course to directly use the data instead of finding them in the paper. And by the way, the paper you quoted "Kolodziejczyk, Aleksandra A., Jong Kyoung Kim, Valentine Svensson, John C. Marioni, and Sarah A. Teichmann. 2015. “The Technology and Biology of Single-Cell RNA Sequencing.” Molecular Cell 58 (4). Elsevier BV: 610–20. doi:10.1016/j.molcel.2015.04.005" seems no data providing. It might be another Deng's paper. However, in the SRA database, there as so much raw data of this paper that we cannot find the data used in your course, that is supposed to be saved in a "share" folder.

tallulandrews commented 6 years ago

The course has been updated for a particular set up for an in-person version of the course. The data from Kolodziejczyk is available in ArrayExpress.

liusyscholar commented 6 years ago

@tallulandrews Thank you so much ! I'm a fresh man that I'm not aware of the place which ERRnumber belonging to. I find the EBI is so powerful. Even I didn't try to search the number by google. What a failure I'm……However，thanks to your hint, I'll try my best to come along way.