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hemberg-lab / scRNA.seq.course

Analysis of single cell RNA-seq data course
https://www.singlecellcourse.org
GNU General Public License v3.0
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Issues with defunct functions #172

Closed ManfrediC closed 2 years ago

ManfrediC commented 4 years ago

Thank you for making this great course available online. Unfortunately, some of the tutorial steps use defunct functions such as isSpike() and calculateQCMetric(). Would it be possible to provide equivalent steps using the replacement functions?

abhay8154 commented 4 years ago

@ManfrediC I also have been trying the tutorial. You can use addPerCellQC(umi) and altExp() functions in place of calculateQCMetric() and isSpike().

prete commented 2 years ago

Fixed on bd6145f (2021 updates)