search

hemberg-lab / scRNA.seq.course

Analysis of single cell RNA-seq data course
https://www.singlecellcourse.org
GNU General Public License v3.0
670 stars 360 forks source link

Can not run the docker image #175

Closed anglixue closed 3 years ago

anglixue commented 3 years ago

Hi,

I tried to run

docker run -p 8888:8888 -e PASSWORD="jupyter" quay.io/hemberg-group/scrna-seq-course:v4.11 But it was stuck at the last file " 5bcb3f516c99: Pull complete 3026db1e6d3a: Pull complete c4b2b52a500c: Pull complete 8cde90254c69: Pull complete 350e3cbd34fa: Pull complete 3da29f383baa: Pull complete 75885a9c477d: Pull complete 88c017945f07: Pull complete 3faa38653212: Waiting "

Is there any way to solve this? Thank you!

Cheers, Angli

prete commented 3 years ago

Hi @alexxue81 please try first pulling the image and run it.

  1. Pull the image. Bear in mind that the image size is ~7.5GB so it may take a while depending on your internet speed.

    docker pull quay.io/hemberg-group/scrna-seq-course:v4.11

  2. Run the pulled image

    
docker run -p 8888:8888 -e PASSWORD="jupyter" quay.io/hemberg-group/scrna-seq-course:v4.11
anglixue commented 3 years ago

Hi Prete,

Thanks for your reply.

I first pull the image but it is still waiting in the "3faa38653212". For other files, it will show the process bar.

Is the link for this file broken?

Cheers, Angli

prete commented 3 years ago

Are you by any chance trying this on a Mac? Seems like it's a bug in docker for mac that happens sometimes: https://github.com/docker/for-mac/issues/2083

Restarting docker service should fixed the issue.

Additionally you can delete the partially download layers using docker image rm -f quay.io/hemberg-group/scrna-seq-course:v4.11 before trying to pull again.

anglixue commented 3 years ago

It works. Thank you!