Fingers-crossed I have fixed the code to find 3 states using monocle, and I have fixed the comparison so we are now comparing the actual pseudotime orderings not the states (because comparing the states makes no sense). Text also adjusted to be more comprehensible.
Fingers-crossed I have fixed the code to find 3 states using monocle, and I have fixed the comparison so we are now comparing the actual pseudotime orderings not the states (because comparing the states makes no sense). Text also adjusted to be more comprehensible.