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hemberg-lab / scRNA.seq.datasets

Collection of public scRNA-Seq datasets used by our group
https://hemberg-lab.github.io/scRNA.seq.datasets/
GNU General Public License v3.0
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Datasets on Amazon not found. #35

Open Looomo opened 3 years ago

Looomo commented 3 years ago

Thanks for your works! I am running your code link_ but I found several datasets which should be downloaded form Amazon server were gone. For example, the Pollen dataset, from ./bash/pollen.sh. Is there anyway to download these datasets or to solve this problem? Thanks!

Looomo commented 3 years ago

By the way, the error info is:

--2021-11-22 09:53:29-- https://s3.amazonaws.com/scrnaseq-public-datasets/manual-data/pollen/NBT_hiseq_linear_tpm_values.txt Resolving s3.amazonaws.com (s3.amazonaws.com)... 52.217.37.46 Connecting to s3.amazonaws.com (s3.amazonaws.com)|52.217.37.46|:443... connected. HTTP request sent, awaiting response... 301 Moved Permanently Location: unspecified ERROR: Redirection (301) without location.

leonfrench commented 2 years ago

It seems there is another missing data file - baron-human.rds is no longer available at: https://scrnaseq-public-datasets.s3.amazonaws.com/scater-objects/baron-human.rds . One suggestion is to host these on figshare or similar.