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hemilpanchiwala / SBSCL

The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.
https://draeger-lab.github.io/SBSCL/
GNU Lesser General Public License v3.0
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Rename COBRASolver to FBA #4

Closed draeger closed 4 years ago

draeger commented 4 years ago

The class COBRASolver is essentially an implementation of a method called Flux Balance Analysis (FBA) and should therefore be renamed. Please indicate this in the release notes for upcoming versions. In the future, many different COBRA methods should be added, so that this name is no longer suitable.

draeger commented 4 years ago

It would probably be better to rename it to FluxBalanceAnalysis to give it a more descriptive name.

hemilpanchiwala commented 4 years ago

@draeger, refactored CobraSolver to FluxBalanceAnalysis in the commit linked above!