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hetio / hetionet

Hetionet: an integrative network of disease
https://neo4j.het.io
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Docker compatibility question #54

Closed ayujain04 closed 1 year ago

ayujain04 commented 1 year ago

Any chance that you have a docker image of dhimmel/hetionet for the arm64?

dhimmel commented 1 year ago

Looks like the dhimmel/hetionet image is amd64 not arm64:

docker image inspect --format {{.Architecture}} dhimmel/hetionet

It's possible you could rebuild the image using the Dockerfile.

ayujain04 commented 1 year ago

I get the container to run this locally: 

2023-07-13 14:07:03 Downloading and extracting database
2023-07-13 14:07:18 Downloading and extracting guides
2023-07-13 14:09:27 Active database: graph.db
2023-07-13 14:09:27 Directories in use:
2023-07-13 14:09:27   home:         /var/lib/neo4j
2023-07-13 14:09:27   config:       /var/lib/neo4j/conf
2023-07-13 14:09:27   logs:         /logs
2023-07-13 14:09:27   plugins:      /var/lib/neo4j/plugins
2023-07-13 14:09:27   import:       /var/lib/neo4j/import
2023-07-13 14:09:27   data:         /var/lib/neo4j/data
2023-07-13 14:09:27   certificates: /var/lib/neo4j/certificates
2023-07-13 14:09:27   run:          /var/lib/neo4j/run
2023-07-13 14:09:27 Starting Neo4j.
2023-07-13 14:09:31 2023-07-13 18:09:31.685+0000 WARN  dbms.active_database is deprecated.
2023-07-13 14:09:31 2023-07-13 18:09:31.754+0000 INFO  ======== Neo4j 3.5.12 ========
2023-07-13 14:09:31 2023-07-13 18:09:31.792+0000 INFO  Starting...
2023-07-13 14:09:37 2023-07-13 18:09:37.125+0000 INFO  Starting upgrade of database
2023-07-13 14:09:37 2023-07-13 18:09:37.164+0000 INFO  Migrating Indexes (1/5):
2023-07-13 14:09:37 2023-07-13 18:09:37.181+0000 INFO    10% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.183+0000 INFO    20% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.184+0000 INFO    30% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.184+0000 INFO    40% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.184+0000 INFO    50% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.185+0000 INFO    60% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.185+0000 INFO    70% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.185+0000 INFO    80% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.186+0000 INFO    90% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.186+0000 INFO    100% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.187+0000 INFO  Migrating Explicit indexes (2/5):
2023-07-13 14:09:37 2023-07-13 18:09:37.189+0000 INFO    10% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.190+0000 INFO    20% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.190+0000 INFO    30% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.191+0000 INFO    40% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.191+0000 INFO    50% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.191+0000 INFO    60% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.192+0000 INFO    70% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.192+0000 INFO    80% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.192+0000 INFO    90% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.193+0000 INFO    100% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.193+0000 INFO  Migrating Store files (3/5):
2023-07-13 14:09:37 2023-07-13 18:09:37.293+0000 INFO    10% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.296+0000 INFO    20% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.296+0000 INFO    30% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.297+0000 INFO    40% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.297+0000 INFO    50% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.298+0000 INFO    60% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.298+0000 INFO    70% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.299+0000 INFO    80% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.299+0000 INFO    90% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.300+0000 INFO    100% completed
2023-07-13 14:09:37 2023-07-13 18:09:37.300+0000 INFO  Migrating Native label scan index (4/5):
2023-07-13 14:09:38 2023-07-13 18:09:38.019+0000 INFO    10% completed
2023-07-13 14:09:38 2023-07-13 18:09:38.154+0000 INFO    20% completed
2023-07-13 14:09:38 2023-07-13 18:09:38.231+0000 INFO    30% completed
2023-07-13 14:09:38 2023-07-13 18:09:38.266+0000 INFO    40% completed
2023-07-13 14:09:38 2023-07-13 18:09:38.299+0000 INFO    50% completed
2023-07-13 14:09:38 2023-07-13 18:09:38.328+0000 INFO    60% completed
2023-07-13 14:09:38 2023-07-13 18:09:38.378+0000 INFO    70% completed
2023-07-13 14:09:38 2023-07-13 18:09:38.415+0000 INFO    80% completed
2023-07-13 14:09:38 2023-07-13 18:09:38.471+0000 INFO    90% completed
2023-07-13 14:09:38 2023-07-13 18:09:38.511+0000 INFO    100% completed
2023-07-13 14:09:38 2023-07-13 18:09:38.536+0000 INFO  Migrating Counts store (5/5):
2023-07-13 14:09:39 2023-07-13 18:09:39.746+0000 INFO    10% completed
2023-07-13 14:09:39 2023-07-13 18:09:39.844+0000 INFO    20% completed
2023-07-13 14:09:39 2023-07-13 18:09:39.931+0000 INFO    30% completed
2023-07-13 14:09:40 2023-07-13 18:09:40.022+0000 INFO    40% completed
2023-07-13 14:09:40 2023-07-13 18:09:40.100+0000 INFO    50% completed
2023-07-13 14:09:40 2023-07-13 18:09:40.283+0000 INFO    60% completed
2023-07-13 14:09:40 2023-07-13 18:09:40.447+0000 INFO    70% completed
2023-07-13 14:09:40 2023-07-13 18:09:40.591+0000 INFO    80% completed
2023-07-13 14:09:40 2023-07-13 18:09:40.711+0000 INFO    90% completed
2023-07-13 14:09:40 2023-07-13 18:09:40.809+0000 INFO    100% completed
2023-07-13 14:09:41 2023-07-13 18:09:41.053+0000 INFO  Successfully finished upgrade of database, took 3s 917ms
2023-07-13 14:09:46 2023-07-13 18:09:46.126+0000 INFO  Deprecated index providers in use: lucene-1.0 (22 indexes). Use procedure 'db.indexes()' to see what indexes use which index provider.
2023-07-13 14:09:51 2023-07-13 18:09:51.743+0000 INFO  Bolt enabled on 0.0.0.0:7687.
2023-07-13 14:09:59 2023-07-13 18:09:59.831+0000 INFO  Started.
2023-07-13 14:10:01 2023-07-13 18:10:01.042+0000 INFO  Mounted unmanaged extension [extension.web] at [/guides]
2023-07-13 14:10:04 2023-07-13 18:10:04.127+0000 WARN  The following warnings have been detected with resource and/or provider classes:
2023-07-13 14:10:04   WARNING: A sub-resource method, public javax.ws.rs.core.Response extension.web.StaticWebResource.index() throws java.io.IOException, with URI template, "/", is treated as a resource method
2023-07-13 14:10:06 2023-07-13 18:10:06.224+0000 INFO  Remote interface available at http://localhost:7474/

However, the remote interface fails to load at this local host link.

dhimmel commented 1 year ago

Logs look healthy, so not sure why you can't access localhost:7474

ayujain04 commented 1 year ago

Yea same. I'm not sure either.