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hewm2008 / NGenomeSyn

Any Way to Show Multi genomic Synteny
MIT License
150 stars 17 forks source link

parameter list #10

Open webbchen opened 4 months ago

webbchen commented 4 months ago

Dear developers

Would it be possible to deposit a full list of user-modifiable parameters in the documentation? A lot can be retrieved from the examples, but probably not all of them. Having them in one file in the repository would be extremely useful!

hewm2008 commented 4 months ago

you can find the most parameter at this file (bin/in-En.conf) https://github.com/hewm2008/NGenomeSyn/blob/main/bin/in-En.conf

taprs commented 3 days ago

I second that suggestion.

The example .conf files showing some functionality are helpful, but it would be good to have the "master dummy config file" with every accessible parameter set to its default value. So far the user has to read paragraphs of comments in several config files that list some "less frequently used" parameters, several per line, without saying their default values, to figure out what can be changed in the layout.

hewm2008 commented 2 days ago

I will update this later