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hewm2008 / NGenomeSyn

Any Way to Show Multi genomic Synteny
MIT License
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input files #11

Closed xbarvazx closed 3 months ago

xbarvazx commented 3 months ago

Hi,

I get these errors when running the config file as in example 1 with my two genome data. Is it a problem for chromosomes to be labelled 'chr1A'?

Argument "chr1" isn't numeric in subtraction (-) at ../../progrems/NGenomeSyn/bin/NGenomeSyn line 1563, <INData> line 1.

Warning : at Link File ngenomesyn_sorted.link can't find the chr 754798 at the the 2 Genome File info

Thanks,

hewm2008 commented 3 months ago

you can head the input file here (ngenomesyn_sorted.link GenomeA.len GenomeB.len) I guess you can try switch the [ GenomeA.len GenomeB.len ]

xbarvazx commented 3 months ago

Thanks, it was a silly mistake as I included the line numbering as a column...

On Wed, Jun 5, 2024, 02:58 hewm2008 @.***> wrote:

you can head the input file here (ngenomesyn_sorted.link GenomeA.len GenomeB.len) I guess you can try switch the [ GenomeA.len GenomeB.len ]

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hewm2008 commented 2 months ago

you can sent your [ len link confi] file to me by hewm2008@gmail.com