Warining: SVG module in Perl is missing, trying to loading the built-in [SVG.pm]...
Loading SVG module done
Use of uninitialized value $ in scalar chomp at /ibex/scratch/cheny0r/NGenomeSyn/bin/NGenomeSyn line 1589.
Use of uninitialized value $ in split at /ibex/scratch/cheny0r/NGenomeSyn/bin/NGenomeSyn line 1589.
Error: InPut Genome Link 1-2 Info easy.link file Format wrong,pleas check it
ALL done, see the xxx.png . you can optimized drawing by [NGenomeSyn] software
optimized: [Filter] and [Merge] small syn blocks to big syn block
hello老师好,非常感谢您的团队开发了这个软件,我在尝试的过程中遇到了一个问题,希望可以得到您的指点: 我在装配好环境之后尝试跑了example1并且成功,然后我就用自己的mags开始跑,但是总是遇到这个问题: Error: InPut Genome Link 1-2 Info easy.link file Format wrong,pleas check it, 然后我打开了这个file发现是空的,请问有什么可能的原因会造成这个结果呢? 我的mags都是原核生物, binning完成度均在80%以上
非常感谢!! 这是我的代码和错误提示: perl /ibex/scratch/cheny0r/NGenomeSyn/bin/GetTwoGenomeSyn.pl -InGenomeA 124182.assembled.fasta -InGenomeB 5_arc_Bathyarchaeia_bin.35.fasta -OutPrefix easy -MappingBin mummer -BinDir /ibex/sw/rl9c/mummer/4.0.0/rl9.1_gnu12.2.0/mummer-4.0.0rc1/install/bin/ -MinLenA 5000 -MinLenB 5000
Warining: SVG module in Perl is missing, trying to loading the built-in [SVG.pm]... Loading SVG module done Use of uninitialized value $ in scalar chomp at /ibex/scratch/cheny0r/NGenomeSyn/bin/NGenomeSyn line 1589. Use of uninitialized value $ in split at /ibex/scratch/cheny0r/NGenomeSyn/bin/NGenomeSyn line 1589.
Error: InPut Genome Link 1-2 Info easy.link file Format wrong,pleas check it ALL done, see the xxx.png . you can optimized drawing by [NGenomeSyn] software optimized: [Filter] and [Merge] small syn blocks to big syn block