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hexylena / docker-rstudio-notebook

RStudio as a Galaxy Interactive Environment
MIT License
5 stars 17 forks source link

Building the image fails #35

Closed aknijn closed 3 years ago

aknijn commented 3 years ago

Hello When I am trying to build the image with docker build ., it fails with the following error:

Step 13/19 : RUN Rscript /tmp/packages/gx.R ---> Running in c39e91136475 Loading required package: usethis Error: Could not find package root, is your working directory inside a package? Execution halted The command '/bin/sh -c Rscript /tmp/packages/gx.R' returned a non-zero code: 1

Did I miss something, some environment parameter to set?

hexylena commented 3 years ago

We're only building the 19.09 branch currently, and that builds fine on quay. You might give that a try.

aknijn commented 3 years ago

Thank you for your quick answer. I do not use quay but managed to build the 17.05 branch. Anyway, I am now using the erasche/docker-rstudio-notebook image although I see that has been created two years ago.

aknijn commented 3 years ago

Update: the master branch builds fine. I was not aware that I had only pulled this package without the GalaxyConnector part causing the build to fail.

hexylena commented 3 years ago

Ahh the recursive submodule, yeah, that bites people sometimes. I will add something to the readme, thanks!