Pasting the nominated executable before a supplied override for the tool command section will likely break - the supplier of a command override probably does not want the executable prepended to their handiwork :)
Needs to be a list. Doh! So now expects one.
Somewhat simplistic test added. What with flake news and tests, this old dog has learned some new tricks. Or perhaps just caught the currently popular fleas?
Name changed to command_override for less confusion. I am probably the only one who ever used this so I hope that won't break anything?
Finessing a replacement is going to be harder. It will need to replace the generated segment so I have resort to text replacement chicanery in the ToolFactory to get it to work..It can now generate a working version of the planemo bwa example using a supplied segment.
Pasting the nominated executable before a supplied override for the tool command section will likely break - the supplier of a command override probably does not want the executable prepended to their handiwork :)
Needs to be a list. Doh! So now expects one.
Somewhat simplistic test added. What with flake news and tests, this old dog has learned some new tricks. Or perhaps just caught the currently popular fleas?
Name changed to command_override for less confusion. I am probably the only one who ever used this so I hope that won't break anything?
Finessing a replacement is going to be harder. It will need to replace the generated segment so I have resort to text replacement chicanery in the ToolFactory to get it to work..It can now generate a working version of the planemo bwa example using a supplied segment.
Please bump version if this is accepted...
Thanks @hexylena