add edam operations

[hexylena]

request from @bebatut

[hexylena]

@bebatut would this be like, a dropdown where you can select some topics? Or do you have a nice way to infer the topics from the tools themselves?

[bebatut]

@bebatut would this be like, a dropdown where you can select some topics?

Yes I think. There is a way to get the full list of topics (they do it in the IFB catalog: https://github.com/IFB-ElixirFr/ifbcat, but did not find the good bit)

Or do you have a nice way to infer the topics from the tools themselves?

I would not do it from the tools themselves.

[hexylena]

Sounds good. It doesn't seem so bad to access via the tsv file, but ok also need to filter on obsolete and do some other things for showing a select box to a user.

$ curl --silent https://edamontology.org/EDAM_1.25.tsv | awk -F '\t' '($1 = /topic_/){print $2, $3}' | head
Genome resequencing Resequencing|WGRS|Amplicon-based sequencing|Whole genome resequencing|Highly targeted resequencing|Amplicon sequencing|Amplicon panels|WGR
Chemometrics 
Metabolic engineering 
Topic sumo:FieldOfStudy
Nucleic acids Nucleic acid informatics|Nucleic acid bioinformatics|Nucleic acid physicochemistry|Nucleic acid properties
Proteins Protein informatics|Protein bioinformatics|Protein databases
Metabolites 
Sequence analysis Sequences|Biological sequences|Sequence databases
Structure analysis Structural bioinformatics|Biomolecular structure|Structure databases|Structures|Molecular structure|Computational structural biology|Structure data resources
Structure prediction RNA structure prediction|Nucleic acid folding|Nucleic acid design|DNA structure prediction|Protein fold recognition|Protein structure prediction|Nucleic acid structure prediction

[hexylena]

And need to decide if a tree view is necessary or not.

[bebatut]

The IFB catalog does not provide the tree view. We could start with the basic view and see later. It might be nice to look also what the new bio.tools website will do

[bebatut]

Use latest instead of EDAM_1.25. The 1.25 is quite old and does not have topics like metabarcoding, etc

[hexylena]

Can do