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hgb-bin-proteomics / CandidateSearch

Proof-of-concept implementation of a search engine that uses sparse matrix multiplication to identify the best peptide candidates for a given mass spectrum.
https://hgb-bin-proteomics.github.io/CandidateSearch
MIT License
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Profile vs Centroid data #15

Closed michabirklbauer closed 11 months ago

michabirklbauer commented 1 year ago

Spectra should be in centroid format, the tested HeLa mgf is in profile mode - that's probably why it performs bad. Needs testing / keep this in mind!

michabirklbauer commented 1 year ago

Spectra should be in centroid format, the tested HeLa mgf is in profile mode - that's probably why it performs bad. Needs testing / keep this in mind!

Yes, centroid format gives way better results. Question is if there is a way to make sure that spectra are in centroid format? And is this even our problem?

michabirklbauer commented 11 months ago

Add info to readme!